DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rh6 and Rh2

DIOPT Version :9

Sequence 1:NP_524368.5 Gene:Rh6 / 41889 FlyBaseID:FBgn0019940 Length:369 Species:Drosophila melanogaster
Sequence 2:NP_524398.1 Gene:Rh2 / 42261 FlyBaseID:FBgn0003248 Length:381 Species:Drosophila melanogaster


Alignment Length:368 Identity:196/368 - (53%)
Similarity:265/368 - (72%) Gaps:9/368 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 PSFAYMRDGRNLSLAESVPAEIMHMVDPYWYQWPPLEPMWFGIIG-FVIAILGTMSLAGNFIVMY 70
            |.|.....| |.|:.::|..::.|:|:|||.::.|::||...|:| |.:||: .:|..||.:|:|
  Fly    18 PRFQAQSSG-NGSVLDNVLPDMAHLVNPYWSRFAPMDPMMSKILGLFTLAIM-IISCCGNGVVVY 80

  Fly    71 IFTSSKGLRTPSNMFVVNLAFSDFMMMFTMFPPVVLNGFYGTWIMGPFLCELYGMFGSLFGCVSI 135
            ||..:|.||||:|:.|:|||||||.||.:..|.:::|.:|.||::||..|::|...|||||||||
  Fly    81 IFGGTKSLRTPANLLVLNLAFSDFCMMASQSPVMIINFYYETWVLGPLWCDIYAGCGSLFGCVSI 145

  Fly   136 WSMTLIAYDRYCVIVKGMARKPLTATAAVLRLMVVWTICGAWALMPLFGWNRYVPEGNMTACGTD 200
            |||.:||:|||.|||||:...|:|...::::::.:|.:...|.:|||.||:.||||||:|||..|
  Fly   146 WSMCMIAFDRYNVIVKGINGTPMTIKTSIMKILFIWMMAVFWTVMPLIGWSAYVPEGNLTACSID 210

  Fly   201 YFAKDWWNRSYIIVYSLWVYLTPLLTIIFSYWHIMKAVAAHEKAMREQAKKMNVASLRNSEADKS 265
            |..:.|..|||:|.|||:||.|||..|.:|||.|:.||||||||||||||||||.|||:|| |..
  Fly   211 YMTRMWNPRSYLITYSLFVYYTPLFLICYSYWFIIAAVAAHEKAMREQAKKMNVKSLRSSE-DCD 274

  Fly   266 KAIEIKLAKVALTTISLWFFAWTPYTIINYAGIFESMHLSPLSTICGSVFAKANAVCNPIVYGLS 330
            |:.|.||||||||||||||.|||||.:|.|.|:|:...|:||:||.|:.|||.:||.||||||:|
  Fly   275 KSAEGKLAKVALTTISLWFMAWTPYLVICYFGLFKIDGLTPLTTIWGATFAKTSAVYNPIVYGIS 339

  Fly   331 HPKYKQVLREKMP-CLACGKDDLTSD---SRTQATAEISESQA 369
            ||||:.||:||.| |:....|:...|   |.|:.|:| ::|:|
  Fly   340 HPKYRIVLKEKCPMCVFGNTDEPKPDAPASDTETTSE-ADSKA 381

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rh6NP_524368.5 7tmA_photoreceptors_insect 48..338 CDD:320207 168/290 (58%)
TM helix 1 50..74 CDD:320207 11/24 (46%)
TM helix 2 83..105 CDD:320207 12/21 (57%)
TM helix 3 121..143 CDD:320207 14/21 (67%)
TM helix 4 165..181 CDD:320207 2/15 (13%)
TM helix 5 209..232 CDD:320207 14/22 (64%)
TM helix 6 273..295 CDD:320207 18/21 (86%)
TM helix 7 306..331 CDD:320207 16/24 (67%)
Rh2NP_524398.1 7tm_4 67..>237 CDD:304433 88/170 (52%)
7tm_1 74..336 CDD:278431 154/262 (59%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45461665
Domainoid 1 1.000 192 1.000 Domainoid score I3159
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 212 1.000 Inparanoid score I3623
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG48050
OrthoDB 1 1.010 - - D389088at33208
OrthoFinder 1 1.000 - - FOG0001799
OrthoInspector 1 1.000 - - mtm6356
orthoMCL 1 0.900 - - OOG6_104608
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X120
109.810

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