DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rh6 and Opn4

DIOPT Version :9

Sequence 1:NP_524368.5 Gene:Rh6 / 41889 FlyBaseID:FBgn0019940 Length:369 Species:Drosophila melanogaster
Sequence 2:NP_038915.1 Gene:Opn4 / 30044 MGIID:1353425 Length:521 Species:Mus musculus


Alignment Length:366 Identity:122/366 - (33%)
Similarity:181/366 - (49%) Gaps:69/366 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 DPYWYQWPPLEPMWFG---------------------------------------IIGFVIAILG 58
            ||.:...|.|:.:|.|                                       .:|.||.::|
Mouse    16 DPSFTTSPALQGIWNGTQNVSVRAQLLSVSPTTSAHQAAAWVPFPTVDVPDHAHYTLGTVILLVG 80

  Fly    59 TMSLAGNFIVMYIFTSSKGLRTPSNMFVVNLAFSDFMMMFTMFPPVVLNGFYGTWIMGPFLCELY 123
            ...:.||..|:|.|..::|||||:|||::|||.|||:|..|..|....:..|..|:.|...||.|
Mouse    81 LTGMLGNLTVIYTFCRNRGLRTPANMFIINLAVSDFLMSVTQAPVFFASSLYKKWLFGETGCEFY 145

  Fly   124 GMFGSLFGCVSIWSMTLIAYDRYCVIVKGMA---RKPLTATAAVLRLMVVWTICGAWALMPLFGW 185
            ...|::||..|:.::|.||.|||.||.:.:|   |.....||.|  |:.||....||:|.|.|||
Mouse   146 AFCGAVFGITSMITLTAIAMDRYLVITRPLATIGRGSKRRTALV--LLGVWLYALAWSLPPFFGW 208

  Fly   186 NRYVPEGNMTACGTDYFAKDWWNRSYIIVYSLWVYLTPLLTIIFSYWHIMKAV--------AAHE 242
            :.|||||.:|:|..||.......|:|.::...:|:..|||.|||.|..|.:|:        ...|
Mouse   209 SAYVPEGLLTSCSWDYMTFTPQVRAYTMLLFCFVFFLPLLIIIFCYIFIFRAIRETGRACEGCGE 273

  Fly   243 KAMREQAKKMNVASLRNSEADKSKAIEIKLAKVALTTISLWFFAWTPYT---IINYAGIFESMHL 304
            ..:|::.:...:.|            |.|:|||||..|.|:..:|.||:   ::.:||.  |..|
Mouse   274 SPLRQRRQWQRLQS------------EWKMAKVALIVILLFVLSWAPYSTVALVAFAGY--SHIL 324

  Fly   305 SPLSTICGSVFAKANAVCNPIVYGLSHPKYKQVLREKMPCL 345
            :|..:...:|.|||:|:.|||:|.::||||:..:.:.:|||
Mouse   325 TPYMSSVPAVIAKASAIHNPIIYAITHPKYRVAIAQHLPCL 365

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rh6NP_524368.5 7tmA_photoreceptors_insect 48..338 CDD:320207 114/342 (33%)
TM helix 1 50..74 CDD:320207 9/23 (39%)
TM helix 2 83..105 CDD:320207 12/21 (57%)
TM helix 3 121..143 CDD:320207 8/21 (38%)
TM helix 4 165..181 CDD:320207 6/15 (40%)
TM helix 5 209..232 CDD:320207 9/22 (41%)
TM helix 6 273..295 CDD:320207 10/24 (42%)
TM helix 7 306..331 CDD:320207 10/24 (42%)
Opn4NP_038915.1 7tm_4 77..>244 CDD:304433 68/168 (40%)
7tm_1 86..347 CDD:278431 104/276 (38%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 445..486
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167845792
Domainoid 1 1.000 183 1.000 Domainoid score I3421
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 207 1.000 Inparanoid score I3695
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001799
OrthoInspector 1 1.000 - - otm42416
orthoMCL 1 0.900 - - OOG6_104608
Panther 1 1.100 - - O PTHR24240
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4703
SonicParanoid 1 1.000 - - X120
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1110.920

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