DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rh6 and Rh5

DIOPT Version :10

Sequence 1:NP_524368.5 Gene:Rh6 / 41889 FlyBaseID:FBgn0019940 Length:363 Species:Drosophila melanogaster
Sequence 2:XP_319247.2 Gene:Rh5 / 1279519 VectorBaseID:AGAMI1_005714 Length:386 Species:Anopheles gambiae


Alignment Length:359 Identity:121/359 - (33%)
Similarity:193/359 - (53%) Gaps:21/359 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 LAESVPAEIMHMVDPYWYQWPPLEPMWFG--IIGFVIAILGTMSLAGNFIVMYIFTSSKGLRTPS 82
            |..::|.|..::|..:|..:|  .|.::.  ::..:..:|...||.||.||::||.:||.||..|
Mosquito    28 LGWNLPPEEQYLVHDHWKGFP--SPPYYMHLMLAMIYFVLMNTSLIGNGIVLWIFGTSKSLRNGS 90

  Fly    83 NMFVVNLAFSDFMMMFTMFPPVVLNGF------YGTWIMGPFLCELYGMFGSLFGCVSIWSMTLI 141
            |||::|||..|.:||..| |..::|.|      ||..      |.:|...||:.|.....|..:|
Mosquito    91 NMFIINLAIFDLLMMCEM-PMFLVNSFSERLVGYGVG------CSVYAALGSMSGIGGAISNAVI 148

  Fly   142 AYDRYCVIVKGMARKPLTATAAVLRLMVVWTICGAWALMPLFG-WNRYVPEGNMTACGTDYFAKD 205
            |:|||..|...:..: |:...|.|.:.:.|.....:.|:|||. |.||:|||.:|.|..||...|
Mosquito   149 AFDRYRTISNPLDGR-LSRVQAGLLICLTWLWTMPFTLLPLFEIWGRYIPEGYLTTCSFDYLTDD 212

  Fly   206 WWNRSYIIVYSLWVYLTPLLTIIFSYWHIMKAVAAHEKAMREQAKKMNVASLRNSEADKSKAIEI 270
            ...|.::.....|.|:.|::.|.:.|..:...|..||..::.||:||||.||..:.::|::|:|:
Mosquito   213 PDTRVFVGCIFTWAYVIPMIFICYFYARLFGHVRQHEMMLKNQARKMNVESLTANRSEKAQAVEM 277

  Fly   271 KLAKVALTTISLWFFAWTPYTIINYAGIF-ESMHLSPLSTICGSVFAKANAVCNPIVYGLSHPKY 334
            ::||.|.|...|:..|||||.|:...|.| :...|:|..|:..:|..|..:..:|.||.:|||||
Mosquito   278 RIAKAAFTIFFLFVCAWTPYAIVTMIGAFGDRTMLTPFVTMVPAVCCKIVSCLDPWVYAISHPKY 342

  Fly   335 KQVLREKMPCLACGK-DDLTSDSRTQATAEISES 367
            :|.|..::|.:...: ||..|.:.::||..:.::
Mosquito   343 RQELERRLPWMGIKEADDSVSTTESKATVVVDQA 376

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rh6NP_524368.5 7tmA_photoreceptors_insect 48..338 CDD:320207 107/299 (36%)
TM helix 1 49..75 CDD:320207 9/25 (36%)
TM helix 2 82..108 CDD:320207 12/25 (48%)
TM helix 3 120..150 CDD:320207 11/29 (38%)
TM helix 4 161..181 CDD:320207 4/19 (21%)
TM helix 5 208..237 CDD:320207 6/28 (21%)
TM helix 6 267..297 CDD:320207 13/29 (45%)
TM helix 7 306..331 CDD:320207 7/24 (29%)
Rh5XP_319247.2 None

Return to query results.
Submit another query.