Protein Alignment Rh6 and tmtops3b

DIOPT Version :10

• Sequence 1: NP_524368.5
• Gene: Rh6 / 41889
• FlyBaseID: FBgn0019940
• Length: 363
• Species: Drosophila melanogaster
• Sequence 2: NP_001269304.1
• Gene: tmtops3b / 102031126
• ZFINID: ZDB-GENE-091204-311
• Length: 379
• Species: Danio rerio
• Alignment Length: 330
• Identity: 90/330 - (27%)
• Similarity: 152/330 - (46%)
• Gaps: 37/330 - (11%)

  Fly    11 YMRDGR-NLSLAESVPAEIMHMVDPYWYQWPPLEPMWFGIIGF--VIAILGTMSLAG---NFIVM 69
            ::||.. |.||.:|:               .|.:...|...|:  |..|||.:.:.|   ||:|:
Zfish     6 FLRDSSVNGSLLDSL---------------SPADQTGFSRAGYTVVAVILGIIFVFGFLCNFVVL 55

  Fly    70 YIFTSSKGLRTPSNMFVVNLAFSDFMMMFTMFPPVVLNGFYGTWIMGPFLCELYGMFGSLFGCVS 134
            .:|.....||||.|:.::|:..||.::.....|.......:|.|:.|...|..||...:|||.||
Zfish    56 LVFARFHVLRTPINLILLNIIVSDMLVCLFGTPLSFAASVHGRWLTGVHGCRWYGFANALFGIVS 120

  Fly   135 IWSMTLIAYDRYCVIVKGMARKPLTATAAVLRLMVVWTICGAWALMPLFGWNRYVPEGNMTACGT 199
            :.|:.:::|:||..|:............|.|.:...|.....|.:.||.||:.|.|||..|.|..
Zfish   121 LVSLAVLSYERYSTILCSSKADASDYRKAWLFITGCWLYSLLWTVPPLLGWSSYGPEGPGTTCSV 185

  Fly   200 DYFAKDWWNRSYIIVYSLWVYLTPLLTIIFSYWHIMKAVAAHEKAMREQAKKMNVASLRNSEADK 264
            .:..:....|||:|...::..|.|||.:::.|..|:  :|.|           .||.:..:.|.:
Zfish   186 QWNKRSPETRSYVICLFVFCLLLPLLLMVYCYGKIL--IAIH-----------GVAKINQTAAQR 237

  Fly   265 SKAIEIKLAKVALTTISLWFFAWTPYTIINYAGIFESMHLSPLSTICGSVFAKANAVCNPIVYGL 329
            .   |..:..:.::.:|.:...|.||.::...|.|.:...||.:::..|:.||::.|.|||:|.|
Zfish   238 R---ETHVLVMVVSMVSCYLLCWMPYGVMALLGTFSAGITSPTASVVSSLLAKSSTVLNPIIYVL 299

  Fly   330 SHPKY 334
            .:.::
Zfish   300 FNNQF 304

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rh6	NP_524368.5	7tmA_photoreceptors_insect	48..338	CDD:320207	82/292 (28%)
		TM helix 1	49..75	CDD:320207	10/30 (33%)
		TM helix 2	82..108	CDD:320207	5/25 (20%)
		TM helix 3	120..150	CDD:320207	12/29 (41%)
		TM helix 4	161..181	CDD:320207	4/19 (21%)
		TM helix 5	208..237	CDD:320207	10/28 (36%)
		TM helix 6	267..297	CDD:320207	5/29 (17%)
		TM helix 7	306..331	CDD:320207	10/24 (42%)
tmtops3b	NP_001269304.1	7tm_GPCRs	34..308	CDD:475119	81/287 (28%)
		TM helix 1	36..60	CDD:410628	9/23 (39%)
		TM helix 2	69..91	CDD:410628	5/21 (24%)
		TM helix 3	107..129	CDD:410628	8/21 (38%)
		TM helix 4	151..167	CDD:410628	3/15 (20%)
		TM helix 5	195..218	CDD:410628	8/22 (36%)
		TM helix 6	243..265	CDD:410628	4/21 (19%)
		TM helix 7	276..301	CDD:410628	10/24 (42%)