Protein Alignment Rh6 and opn4b

DIOPT Version :10

• Sequence 1: NP_524368.5
• Gene: Rh6 / 41889
• FlyBaseID: FBgn0019940
• Length: 363
• Species: Drosophila melanogaster
• Sequence 2: NP_001245153.1
• Gene: opn4b / 100884131
• ZFINID: ZDB-GENE-080415-3
• Length: 565
• Species: Danio rerio
• Alignment Length: 343
• Identity: 121/343 - (35%)
• Similarity: 187/343 - (54%)
• Gaps: 36/343 - (10%)

  Fly    50 IGFVIAILGTMSLAGNFIVMYIFTSSKGLRTPSNMFVVNLAFSDFMMMFTMFPPVVLNGFYGTWI 114
            ||.||..:|...:.||.:|||.|..|:.||||:|||::|||.:||:|..|..|.......:..||
Zfish    71 IGSVILAVGITGMVGNLLVMYAFCKSRSLRTPANMFIINLAVTDFLMCVTQTPIFFTTSLHKRWI 135

  Fly   115 MGPFLCELYGMFGSLFGCVSIWSMTLIAYDRYCVIVKGMAR-KPLTATAAVLRLMVVWTICGAWA 178
            .|...||||...|:|||..|:.::.:||.|||.||.:.:|. ..::...|:|.|...|.....|:
Zfish   136 FGEKGCELYAFCGALFGICSMITLMIIAVDRYFVITRPLASIGVMSRKRALLILSAAWAYSMGWS 200

  Fly   179 LMPLFGWNRYVPEGNMTACGTDYFAKDWWNRSYIIVYSLWVYLTPLLTIIFSYWHIMKAVAAHEK 243
            |.|.|||:.|||||.:|:|..||.......|:|.::...:|:..||..||:.|:.|.||:....:
Zfish   201 LPPFFGWSAYVPEGLLTSCSWDYMTFSPSVRAYTMLLFTFVFFIPLFVIIYCYFFIFKAIRETNR 265

  Fly   244 AM---------REQAKKMNVASLRNSEADKSKAIEIKLAKVALTTISLWFFAWTPYTII---NYA 296
            |:         |:..||::  .::|         |.|:||:||..|.|:..:|:||:.:   .:|
Zfish   266 AVGKINGEGGPRDSIKKIH--RMKN---------EWKMAKIALIVILLYVISWSPYSCVALTAFA 319

  Fly   297 GIFESMHLSPLSTICGSVFAKANAVCNPIVYGLSHPKYKQVLREKMPCLA---C--GKDDLTSDS 356
            |..:.  |:|......:|.|||:|:.|||:|.::||||:..:.:.:|||.   |  .:|..:|.|
Zfish   320 GYADM--LTPYMNSVPAVIAKASAIHNPIIYAITHPKYRSAIAKYIPCLGVLLCVPRRDRFSSSS 382

  Fly   357 -----RTQATAEISESQA 369
                 |:..|::.||:.:
Zfish   383 FISTRRSTLTSQSSETSS 400

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rh6	NP_524368.5	7tmA_photoreceptors_insect	48..338	CDD:320207	110/300 (37%)
		TM helix 1	49..75	CDD:320207	11/24 (46%)
		TM helix 2	82..108	CDD:320207	11/25 (44%)
		TM helix 3	120..150	CDD:320207	15/29 (52%)
		TM helix 4	161..181	CDD:320207	6/19 (32%)
		TM helix 5	208..237	CDD:320207	9/28 (32%)
		TM helix 6	267..297	CDD:320207	11/32 (34%)
		TM helix 7	306..331	CDD:320207	10/24 (42%)
opn4b	NP_001245153.1	7tmA_Melanopsin	69..359	CDD:320458	110/300 (37%)
		TM helix 1	70..96	CDD:320458	11/24 (46%)
		TM helix 2	103..129	CDD:320458	11/25 (44%)
		TM helix 3	141..171	CDD:320458	15/29 (52%)
		TM helix 4	183..205	CDD:320458	7/21 (33%)
		TM helix 5	230..260	CDD:320458	10/29 (34%)
		TM helix 6	287..317	CDD:320458	12/38 (32%)
		TM helix 7	327..352	CDD:320458	10/24 (42%)