Protein Alignment Rh6 and tmtopn2

DIOPT Version :10

• Sequence 1: NP_524368.5
• Gene: Rh6 / 41889
• FlyBaseID: FBgn0019940
• Length: 363
• Species: Drosophila melanogaster
• Sequence 2: XP_017946618.1
• Gene: tmtopn2 / 100490436
• XenbaseID: XB-GENE-990436
• Length: 390
• Species: Xenopus tropicalis
• Alignment Length: 409
• Identity: 102/409 - (24%)
• Similarity: 177/409 - (43%)
• Gaps: 94/409 - (22%)

  Fly     8 SFAYMRDGRNLSL-AESVPAEIMHMVDPYWYQWPPLEPMWFGIIGFVIAILGTMSLAGNFIVMYI 71
            |.:|:.:  :||| .|:|.:...|.|...:             :||:: |.|.::   ||:|:.:
 Frog    17 SMSYIEN--DLSLPTEAVLSRTGHTVVAIF-------------LGFIL-IFGFLN---NFVVLIL 62

  Fly    72 FTSSKGLRTPSNMFVVNLAFSDFMMMFTMFPPVVLNGFYGTWIMGPFLCELYGMFGSLFGCVSIW 136
            |...|.||||.||.::|::.||.::..:.......:...|.||.|.:.|:.||...|.||.||:.
 Frog    63 FCKFKTLRTPVNMMLLNISASDMLVCVSGTTLSFTSSIKGKWIGGEYGCQWYGFVNSCFGIVSLI 127

  Fly   137 SMTLIAYDRYCVIV---KG--MARKPLTATAAVLRLMVVWTICGAWALMPLFGWNRYVPEGNMTA 196
            |:.:::|:||..:.   ||  ..:|.|.|.|:.....:|||:      .||.||:.|..||..|:
 Frog   128 SLAILSYERYSTLTLYNKGGPNFKKALLAVASSWLYSLVWTV------PPLLGWSSYGREGAGTS 186

  Fly   197 CGTDYFAKDWWNRSYIIVYSLWVYLTPLLTIIFSYWHIMKAVAAHEKAMREQAKKMNVASLRNSE 261
            |...:.::...:.||||...::....|:..:::.|..::.||....|..:..|:|.
 Frog   187 CSVRWTSESVESVSYIICLFIFCLALPVFVMLYCYGRLLYAVKQVGKIRKIAARKR--------- 242

  Fly   262 ADKSKAIEIKLAKVALTTISLWFFAWTPYTIINYAGIF-ESMHLSPLSTICGSVFAKANAVCNPI 325
                   |..:..:.:||:..:...|.||.::.....| ....:||::::..|:.||::.|.|||
 Frog   243 -------EYHVLFMVITTVICYLLCWLPYGVVALLATFGRPGVISPVASVVPSILAKSSTVFNPI 300

  Fly   326 VYGL--------------SHP---------------------KYKQVLR-----------EKMPC 344
            :|.|              .||                     |...::.           :||||
 Frog   301 IYILMNKQFYKCFLILFHCHPTSSADGKSICQSNYTVIQLNQKLNNIVAIPGQTQIPESVDKMPC 365

  Fly   345 LACGKDDLTSDSRTQATAE 363
            :....::..||...|:|.|
 Frog   366 IHRQNNESPSDQMPQSTTE 384

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rh6	NP_524368.5	7tmA_photoreceptors_insect	48..338	CDD:320207	84/330 (25%)
		TM helix 1	49..75	CDD:320207	8/25 (32%)
		TM helix 2	82..108	CDD:320207	5/25 (20%)
		TM helix 3	120..150	CDD:320207	12/29 (41%)
		TM helix 4	161..181	CDD:320207	4/19 (21%)
		TM helix 5	208..237	CDD:320207	6/28 (21%)
		TM helix 6	267..297	CDD:320207	6/29 (21%)
		TM helix 7	306..331	CDD:320207	10/38 (26%)
tmtopn2	XP_017946618.1	7tmA_tmt_opsin	39..313	CDD:320214	82/312 (26%)
		TM helix 1	40..66	CDD:320214	9/42 (21%)
		TM helix 2	73..99	CDD:320214	5/25 (20%)
		TM helix 3	111..141	CDD:320214	12/29 (41%)
		TM helix 4	151..173	CDD:320214	8/27 (30%)
		TM helix 5	198..228	CDD:320214	6/29 (21%)
		TM helix 6	241..271	CDD:320214	7/45 (16%)
		TM helix 7	281..306	CDD:320214	10/24 (42%)