Protein Alignment Rh6 and tmtops2b

DIOPT Version :10

• Sequence 1: NP_524368.5
• Gene: Rh6 / 41889
• FlyBaseID: FBgn0019940
• Length: 363
• Species: Drosophila melanogaster
• Sequence 2: NP_001269302.1
• Gene: tmtops2b / 100331536
• ZFINID: ZDB-GENE-110411-43
• Length: 368
• Species: Danio rerio
• Alignment Length: 361
• Identity: 92/361 - (25%)
• Similarity: 158/361 - (43%)
• Gaps: 50/361 - (13%)

  Fly    31 MVDPYWYQWP--PLEPMWFGIIGFVIAILGTMSLAGNFIVMYIFTSSKGLRTPSNMFVVNLAFSD 93
            ::|..|...|  .|....|..:...:..:.|.....|.:|:.:|...|.||||.||.::|::.||
Zfish     9 LLDEDWSDSPMETLSRAGFIALSVFLGFIMTFGFFNNLVVLVLFCKFKTLRTPVNMLLLNISISD 73

  Fly    94 FMMMFTMFPPVV--LNGFYGTWIMGPFLCELYGMFGSLFGCVSIWSMTLIAYDRYCVIV-----K 151
              |:..||...:  .:...|.|::|...|..||...|.||.||:.|:.:::||||..:.     .
Zfish    74 --MLVCMFGTTLSFASSVRGRWLLGRHGCMWYGFINSCFGIVSLISLVVLSYDRYSTLTVYHKRA 136

  Fly   152 GMARKPLTATAAVLRLMVVWTICGAWALMPLFGWNRYVPEGNMTACGTDYFAKDWWNRSYIIVYS 216
            ...||||.|........::||:      .||.||:.|..||..|:|...:..:...:.:|||...
Zfish   137 PDYRKPLLAVGGSWLYSLIWTV------PPLLGWSSYGLEGAGTSCSVSWTQRTAESHAYIICLF 195

  Fly   217 LWVYLTPLLTIIFSYWHIMKAVAAHEKAMREQAKKMNVASLRNSEADKSKAIEIKLAKVALTTIS 281
            ::....|:|.:::.|..::.||             ..|..:|.:.|.|.   |..:..:.:||:.
Zfish   196 VFCLGLPVLVMVYCYGRLLYAV-------------KQVGKIRKTAARKR---EYHVLFMVITTVV 244

  Fly   282 LWFFAWTPYTIINYAGIF-ESMHLSPLSTICGSVFAKANAVCNPIVYGLSHPKYKQVLREKMPC- 344
            .:...|.||.::.....| ....:||::::..|:.||::.|.||::|.|.:.::.:..|....|
Zfish   245 CYLLCWMPYGVVAMMATFGRPGIISPVASVVPSLLAKSSTVINPLIYILMNKQFYRCFRILFCCQ 309

  Fly   345 ---LACGKDDLTS------------DSRTQATAEIS 365
               |..|...:.|            .:....||:||
Zfish   310 RSLLQNGHSSMPSKTTVIQLNRRVNSNAVACTAQIS 345

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rh6	NP_524368.5	7tmA_photoreceptors_insect	48..338	CDD:320207	78/297 (26%)
		TM helix 1	49..75	CDD:320207	4/25 (16%)
		TM helix 2	82..108	CDD:320207	8/27 (30%)
		TM helix 3	120..150	CDD:320207	13/29 (45%)
		TM helix 4	161..181	CDD:320207	2/19 (11%)
		TM helix 5	208..237	CDD:320207	6/28 (21%)
		TM helix 6	267..297	CDD:320207	6/29 (21%)
		TM helix 7	306..331	CDD:320207	9/24 (38%)
tmtops2b	NP_001269302.1	7tmA_tmt_opsin	28..302	CDD:320214	78/297 (26%)
		TM helix 1	29..55	CDD:320214	4/25 (16%)
		TM helix 2	62..88	CDD:320214	8/27 (30%)
		TM helix 3	100..130	CDD:320214	13/29 (45%)
		TM helix 4	140..162	CDD:320214	8/27 (30%)
		TM helix 5	187..217	CDD:320214	6/29 (21%)
		TM helix 6	230..260	CDD:320214	7/32 (22%)
		TM helix 7	270..295	CDD:320214	9/24 (38%)