Protein Alignment Rh6 and rho

DIOPT Version :10

• Sequence 1: NP_524368.5
• Gene: Rh6 / 41889
• FlyBaseID: FBgn0019940
• Length: 363
• Species: Drosophila melanogaster
• Sequence 2: NP_001090803.1
• Gene: rho / 100037900
• XenbaseID: XB-GENE-966887
• Length: 354
• Species: Xenopus tropicalis
• Alignment Length: 366
• Identity: 97/366 - (26%)
• Similarity: 177/366 - (48%)
• Gaps: 31/366 - (8%)

  Fly    14 DGRNLSLAESVPAEIMHMVDPYWY-QWPPLEPMWFGIIGFVIAILGTMSLAGNFIVMYIFTSSKG 77
            :|.|..:..|....::.  .|:.| |:...||..:..:...:.:|..:....||:.:|:....|.
 Frog     5 EGPNFYIPMSNKTGVVR--SPFDYPQYYLAEPWKYSALAAYMFLLILLGFPINFMTLYVTIQHKK 67

  Fly    78 LRTPSNMFVVNLAFSDFMMMFTMFPPVVLNGFYGTWIMGPFLCELYGMFGSLFGCVSIWSMTLIA 142
            ||||.|..::||.|::..|:...|...:....:|.:|.|...|.:.|.|.:|.|.:::||:.::|
 Frog    68 LRTPLNYILLNLVFANHFMVLCGFTVTMYTSMHGYFIFGQTGCYIEGFFATLGGEMALWSLVVLA 132

  Fly   143 YDRYCVIVKGMARKPLTATAAVLRLMVVWTICGAWALMPLFGWNRYVPEGNMTACGTDYFA-KDW 206
            .:||.|:.|.||........|::.::..|.:..:.|..|||||:||:|||...:||.||:. |..
 Frog   133 IERYVVVCKPMANFRFGENHAIMGVVFTWIMALSCAAPPLFGWSRYIPEGMQCSCGVDYYTLKPE 197

  Fly   207 WNRSYIIVYSLWVYLT-PLLTIIFSYWHIMKAVAAHEKAMREQAKKMNVASLRNSEADKSKAIEI 270
            .|....:||...|:.| ||..|.|.|..::..|  .|.|.::|            |:..::..|.
 Frog   198 VNNESFVVYMFIVHFTIPLCVIFFCYGRLLCTV--KEAAAQQQ------------ESATTQKAEK 248

  Fly   271 KLAKVALTTISLWFFAWTPYTIIN-YAGIFESMHLSPLSTICGSVFAKANAVCNPIVYGLSHPKY 334
            ::.::.:..:..:...|.||..:. |....:.....|:.....:.|||::|:.||::|.:.:.::
 Frog   249 EVTRMVVMMVIFFLICWVPYAYVAFYIFTHQGSDFGPVFMTVPAFFAKSSAIYNPVIYIVLNKQF 313

  Fly   335 KQVLREKMPCLACGKDDL-------TSDSRTQATAEISESQ 368
            :..|   :..|.|||:..       .:.|:|:|:: :|.||
 Frog   314 RNCL---ITTLCCGKNPFGDEEGSSAASSKTEASS-VSSSQ 350

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rh6	NP_524368.5	7tmA_photoreceptors_insect	48..338	CDD:320207	78/292 (27%)
		TM helix 1	49..75	CDD:320207	4/25 (16%)
		TM helix 2	82..108	CDD:320207	6/25 (24%)
		TM helix 3	120..150	CDD:320207	11/29 (38%)
		TM helix 4	161..181	CDD:320207	3/19 (16%)
		TM helix 5	208..237	CDD:320207	10/29 (34%)
		TM helix 6	267..297	CDD:320207	5/30 (17%)
		TM helix 7	306..331	CDD:320207	8/24 (33%)
rho	NP_001090803.1	Rhodopsin_N	3..37	CDD:313611	8/33 (24%)
		7tmA_MWS_opsin	38..317	CDD:381742	78/292 (27%)
		TM helix 1	39..65	CDD:381742	4/25 (16%)
		TM helix 2	72..99	CDD:381742	6/26 (23%)
		TM helix 3	110..140	CDD:381742	11/29 (38%)
		TM helix 4	151..173	CDD:381742	4/21 (19%)
		TM helix 5	200..230	CDD:381742	9/29 (31%)
		TM helix 6	245..275	CDD:381742	4/29 (14%)
		TM helix 7	285..310	CDD:381742	8/24 (33%)