DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rh6 and opn8a

DIOPT Version :9

Sequence 1:NP_524368.5 Gene:Rh6 / 41889 FlyBaseID:FBgn0019940 Length:369 Species:Drosophila melanogaster
Sequence 2:NP_001303876.1 Gene:opn8a / 100002138 ZFINID:ZDB-GENE-151029-1 Length:335 Species:Danio rerio


Alignment Length:340 Identity:89/340 - (26%)
Similarity:147/340 - (43%) Gaps:42/340 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 VDPYWYQWPPLEPMWFGIIGFVIAILGTMSLAGNFIVMYIFTSSKGLRTPSNMFVVNLAFSDFMM 96
            :|.|..:..|......|....|||||   |:.||..|:........:.....:..||||.:|..|
Zfish     1 MDRYTSKLSPAVDYSAGTFLLVIAIL---SILGNAAVLLTAAWRHSVLKAPELLTVNLAVTDIGM 62

  Fly    97 MFTMFPPVVLNGFYGTWIMGPFLCELYGMFGSLFGCVSIWSMTLIAYDRYCVIVKG--------M 153
            ..:|:|..:.:.|...||.|...|..||:.|.:|...||.::.::...||  :|.|        .
Zfish    63 ALSMYPLSIASAFNHAWIGGDPSCLYYGLMGMIFSVASIMTLAVMGLVRY--LVTGNPPKSGSKF 125

  Fly   154 ARKPLTATAAVLRLMVVWTICGAWALMPLFGWNRYVPEGNMTACGTDYFA-KDWWNR-SYIIVYS 216
            .||    |.::| :.|:|.....||:.|:.||..|.||....||..|:.. :...|| |:|:..:
Zfish   126 RRK----TISIL-IGVIWMYSLLWAVFPILGWGGYGPEPFGLACSVDWMGYQHSLNRSSFIMALA 185

  Fly   217 LWVYLTPLLTIIFSY----WHIMKAVAAHEKAMREQAKKMNVASLRNSEADKSKAIEIKLAKVAL 277
            :...|.|.:.|:|||    |.:.||..:.:.               |.....|.|:|.|:..:.:
Zfish   186 ILCTLMPCVVILFSYSGIAWKLHKAYQSIQS---------------NDNLPNSGAVERKVTLMGI 235

  Fly   278 TTISLWFFAWTPYTIINYAGIFESM---HLSPLSTICGSVFAKANAVCNPIVYGLSHPKYKQVLR 339
            ...:.:..:|.||..::...:|.|.   .:.|:.::...:|||.:.|.||:||.:....:::.:.
Zfish   236 LISTGFIVSWAPYVFVSLWTMFRSEGEDSVVPIVSLLPCLFAKCSTVYNPLVYYVFRKSFRREIH 300

  Fly   340 EKMPCLACGKDDLTS 354
            :...|...|..|..|
Zfish   301 QIRICCFQGCWDAVS 315

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rh6NP_524368.5 7tmA_photoreceptors_insect 48..338 CDD:320207 82/306 (27%)
TM helix 1 50..74 CDD:320207 9/23 (39%)
TM helix 2 83..105 CDD:320207 8/21 (38%)
TM helix 3 121..143 CDD:320207 6/21 (29%)
TM helix 4 165..181 CDD:320207 5/15 (33%)
TM helix 5 209..232 CDD:320207 9/27 (33%)
TM helix 6 273..295 CDD:320207 3/21 (14%)
TM helix 7 306..331 CDD:320207 9/24 (38%)
opn8aNP_001303876.1 7tm_4 21..>219 CDD:304433 63/222 (28%)
7tm_1 30..288 CDD:278431 73/279 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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