DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Act88F and ARP2

DIOPT Version :9

Sequence 1:NP_524367.1 Gene:Act88F / 41885 FlyBaseID:FBgn0000047 Length:376 Species:Drosophila melanogaster
Sequence 2:NP_010255.1 Gene:ARP2 / 851532 SGDID:S000002187 Length:391 Species:Saccharomyces cerevisiae


Alignment Length:381 Identity:180/381 - (47%)
Similarity:252/381 - (66%) Gaps:16/381 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 DDAGALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRP---RHQGVMVGMGQKDSYVGDEAQSKRGI 65
            |....:|:|.|:|..|.|.||::.|...||||||||   ..:...|....||..:||||...|..
Yeast     2 DPHNPIVLDQGTGFVKIGRAGENFPDYTFPSIVGRPILRAEERASVATPLKDIMIGDEASEVRSY 66

  Fly    66 LTLKYPIEHGIITNWDDMEKIWHHTFYNELRV-APEEHPVLLTEAPLNPKANREKMTQIMFETFN 129
            |.:.||:|:|||.||.|||.:|.:.|:.:::: :.....:||||.|:||..|||||.::|||.::
Yeast    67 LQISYPMENGIIKNWTDMELLWDYAFFEQMKLPSTSNGKILLTEPPMNPLKNREKMCEVMFEKYD 131

  Fly   130 SPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGFALPHAILRLDLAGRDLTDYLMKIL 194
            ...:||||||||:|||.|.::|:|:||||||:|.||:||...|.|...|||:||||:|.:|:.:|
Yeast   132 FGGVYVAIQAVLALYAQGLSSGVVVDSGDGVTHIVPVYESVVLSHLTRRLDVAGRDVTRHLIDLL 196

  Fly   195 TERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCP 259
            :.|||:|..||:.|.||.||||||||:.|.:.:...|..:|:|.:|||||||:.|.:|.|||..|
Yeast   197 SRRGYAFNRTADFETVRQIKEKLCYVSYDLDLDTKLARETTALVESYELPDGRTIKVGQERFEAP 261

  Fly   260 EALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANSVLSGGTTMYPGIADRMQKEITAL--- 321
            |.||||..:.:|..|:.|.::|::...|||||..||...|||||::||||:..|::||:..|   
Yeast   262 ECLFQPGLVDVEQPGVGELLFNTVQSADVDIRSSLYKAIVLSGGSSMYPGLPSRLEKELKQLWFS 326

  Fly   322 -----APSTI---KIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKQEYDESGP 368
                 .||.:   |::|..||.||:.|:|||::||| ::....||:||||:.||||
Yeast   327 RVLHNDPSRLDKFKVRIEDPPRRKHMVFIGGAVLASIMADKDHMWLSKQEWQESGP 382

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Act88FNP_524367.1 PTZ00281 1..376 CDD:173506 180/381 (47%)
ARP2NP_010255.1 ACTIN 4..387 CDD:214592 179/379 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5277
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S102
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.760

Return to query results.
Submit another query.