DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Act88F and ARP8

DIOPT Version :9

Sequence 1:NP_524367.1 Gene:Act88F / 41885 FlyBaseID:FBgn0000047 Length:376 Species:Drosophila melanogaster
Sequence 2:NP_568836.2 Gene:ARP8 / 835717 AraportID:AT5G56180 Length:471 Species:Arabidopsis thaliana


Alignment Length:379 Identity:106/379 - (27%)
Similarity:178/379 - (46%) Gaps:71/379 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 GALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP 71
            |:::||.|||.||.|::...:|.       ||   ....:..|..:|.:....|.          
plant   134 GSIIIDGGSGYCKFGWSKYASPS-------GR---SATFLEFGNIESPIYARLQQ---------- 178

  Fly    72 IEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL-------NPKANREKMTQIMFET-- 127
                           :..|.:..::|.|...|:::: .||       :.||:|.::...:|..  
plant   179 ---------------FFATIFTRMQVKPSMQPIVVS-LPLCHFDDTESAKASRRQLKTAIFNVLF 227

  Fly   128 -FNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGFALPHAILR------LDLAGRD 185
             .|.||:....||||:|||:.||:|||::.|..|...:||..|     .::|      :......
plant   228 DMNVPAVCAVNQAVLALYAARRTSGIVVNIGFQVITILPILHG-----KVMRQVGVEVIGFGALK 287

  Fly   186 LTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVIT 250
            ||.:|.:.:.|...||.:.   ..||.:||||||||||::.|:     |...:.|.|:......|
plant   288 LTGFLKEKMQENNISFQSL---YTVRTLKEKLCYVALDYKAEL-----SKDTQASVEVSGEGWFT 344

  Fly   251 IGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCD-VDIRKD--LYANSVLSGGTTMYPGIAD 312
            :..|||:..|.||||...||.:..:|:.|...:..|| ..:..|  .:...||:||:...||:::
plant   345 LSKERFQTGEILFQPRLAGMRAMSLHQAVSLCMDHCDAAGLTGDDSWFKTVVLTGGSACLPGLSE 409

  Fly   313 RMQKEITALAPSTIK--IKIIAPPERKYSVWIGGSILASLSTFQQMW-ISKQEY 363
            |:::|:....||:|.  |::|.||....:.|.|..::::||.|...| |:::::
plant   410 RLERELQDHLPSSISNGIRVIPPPYGVDTSWHGAKLISNLSIFPGPWCITRKQF 463

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Act88FNP_524367.1 PTZ00281 1..376 CDD:173506 106/379 (28%)
ARP8NP_568836.2 F-box-like 43..83 CDD:289689
ACTIN 136..462 CDD:214592 105/374 (28%)
NBD_sugar-kinase_HSP70_actin <182..463 CDD:302596 91/294 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5277
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11937
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.910

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