DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Act88F and Actr3

DIOPT Version :10

Sequence 1:NP_524367.1 Gene:Act88F / 41885 FlyBaseID:FBgn0000047 Length:376 Species:Drosophila melanogaster
Sequence 2:NP_112330.1 Gene:Actr3 / 81732 RGDID:71024 Length:418 Species:Rattus norvegicus


Alignment Length:420 Identity:150/420 - (35%)
Similarity:215/420 - (51%) Gaps:63/420 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 ALVIDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYVGDEAQSKRG 64
            |.|:|.|:|..|.|:||:..|:.:.||.        ||....:.||.|:...|.::||||..|..
  Rat     7 ACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGDEAIEKPT 71

  Fly    65 ILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN 129
            ..| |:||.|||:.:||.||:......:..||..||:|..||||.|||...|||...:||||:||
  Rat    72 YAT-KWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFESFN 135

  Fly   130 SPAMYVAIQAVLSLYAS-------GRT-TGIVLDSGDGVSHTVPIYEGFALPHAILRLDLAGRDL 186
            .|.:|:|:||||:|.||       .|| ||.|:||||||:|.:|:.||:.:...|..:.:||||:
  Rat   136 VPGLYIAVQAVLALAASWTSRQVGERTLTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDI 200

  Fly   187 TDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQ---- 247
            |.::.::|.:|..........|..:.:||:..||..|..:|.          ..|: .||.    
  Rat   201 TYFIQQLLRDREVGIPPEQSLETAKAVKERYSYVCPDLVKEF----------NKYD-TDGSKWIK 254

  Fly   248 -------------VITIGNERFRCPEALFQPSFLGME-SCGIHETVYNSIMKCDVDIRKDLYANS 298
                         .|.:|.|||..||..|.|.|...: :..|.|.|...|..|.:|:|:.||.|.
  Rat   255 QYTGVNAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNI 319

  Fly   299 VLSGGTTMYPGIADRMQKEIT----------------ALAPSTIKIKIIAPPERKYSVWIGGSIL 347
            |||||:||:.....|:|:::.                .|.|..|.:::|....::|:||.|||:|
  Rat   320 VLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSML 384

  Fly   348 ASLSTFQQMWISKQEYDESGPGIV-HRKCF 376
            ||...|.|:..:|::|:|.||.|. |...|
  Rat   385 ASTPEFYQVCHTKKDYEEIGPSICRHNPVF 414

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Act88FNP_524367.1 ASKHA_NBD_actin 8..371 CDD:466823 147/412 (36%)
Actr3NP_112330.1 ASKHA_NBD_Arp3-like 7..410 CDD:466822 148/414 (36%)

Return to query results.
Submit another query.