DRSC/TRiP Functional Genomics Resources

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Protein Alignment Act88F and Actl6a

DIOPT Version :10

Sequence 1:NP_524367.1 Gene:Act88F / 41885 FlyBaseID:FBgn0000047 Length:376 Species:Drosophila melanogaster
Sequence 2:NP_001034122.1 Gene:Actl6a / 361925 RGDID:1307747 Length:429 Species:Rattus norvegicus


Alignment Length:423 Identity:152/423 - (35%)
Similarity:228/423 - (53%) Gaps:54/423 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 DDAGALVIDNGSGMCKAGFAGDDAPRAVFPSIVG----RPRHQGVMVGMGQKDS------YVGDE 58
            |:.||||.|.||...:||:||:|.|:..||:.:|    |.....:|...|.|..      |:...
  Rat     9 DEVGALVFDIGSYTVRAGYAGEDCPKVDFPTAIGVVLERDDGSTMMEIDGDKGKQGGPTYYIDTN 73

  Fly    59 A-QSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 122
            | :..|..:....|:::|::.:||..:.|..||:...::.....||||::|||.|.:|.|||:|:
  Rat    74 ALRVPRESMEAISPLKNGMVEDWDSFQAILDHTYKMHVKSEASLHPVLMSEAPWNTRAKREKLTE 138

  Fly   123 IMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHT--VPIYEGFALPHAILRLDLAGRD 185
            :|||.::.||.::...|||:.:|:||:||::|||  |.:||  :|:::|:.|...|::..|||..
  Rat   139 LMFEHYSIPAFFLCKTAVLTAFANGRSTGLILDS--GATHTTAIPVHDGYVLQQGIVKSPLAGDF 201

  Fly   186 LTDYLMKILTERGYSFT---TTAEREIVRD-------IKEKL-------------CYVALDFEQE 227
            :|....::..|......   ..|.:|.||:       .||||             | |..||:..
  Rat   202 ITMQCRELFQEMNIELIPPYMIASKEAVREGSPANWKRKEKLPQVTRSWHNYMCNC-VIQDFQAS 265

  Fly   228 MATAAASTSLEK--------SYELPDGQVITIGNERFRCPEALFQPS----FLGMESCGIHETVY 280
            :...:.||..|:        .||.|:|.....|.||.:.||.||.||    ..|....|:...|.
  Rat   266 VLQVSDSTYDEQVAAQMPTVHYEFPNGYNCDFGAERLKIPEGLFDPSNVKGLSGNTMLGVSHVVT 330

  Fly   281 NSIMKCDVDIRKDLYANSVLSGGTTMYPGIADRMQKEITALAPSTIKIKIIA---PPERKYSVWI 342
            .|:..||:|||..||.:.:::||.|:.....||:.:|::...|.::::|:||   ..||::|.||
  Rat   331 TSVGMCDIDIRPGLYGSVIVAGGNTLIQSFTDRLNRELSQKTPPSMRLKLIANNTTVERRFSSWI 395

  Fly   343 GGSILASLSTFQQMWISKQEYDESGPGIVHRKC 375
            ||||||||.||||||||||||:|.|...|.|||
  Rat   396 GGSILASLGTFQQMWISKQEYEEGGKQCVERKC 428

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Act88FNP_524367.1 ASKHA_NBD_actin 8..371 CDD:466823 146/413 (35%)
Actl6aNP_001034122.1 ASKHA_NBD_Arp4_ACTL6-like 8..420 CDD:466846 147/413 (36%)

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