DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Act88F and arp42

DIOPT Version :10

Sequence 1:NP_524367.1 Gene:Act88F / 41885 FlyBaseID:FBgn0000047 Length:376 Species:Drosophila melanogaster
Sequence 2:NP_594546.2 Gene:arp42 / 2541496 PomBaseID:SPAC23D3.09 Length:424 Species:Schizosaccharomyces pombe


Alignment Length:433 Identity:132/433 - (30%)
Similarity:208/433 - (48%) Gaps:72/433 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 DDAGALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI--L 66
            ::..:||||.||...:.|:||:::|..:.||      :.||...:..::.||.||.|....|  :
pombe     2 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHAPIPGM 60

  Fly    67 TLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSP 131
            .:|....:|||.:|:.....|......:|:|.|.|:.:::||...||::.|:::.:..||..:.|
pombe    61 EVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVP 125

  Fly   132 AMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGFALPHAILRLDLAGRDLTDYLMKILTE 196
            |.|:..|||...:|:.::|.:::|.|...:...|:.:|..:...|.:..|||..|...:.::...
pombe   126 AFYLTKQAVCVAFANSKSTALIVDIGSDNASVTPVVDGLIIRKGIFKQSLAGDFLNANIEQLFNT 190

  Fly   197 RGYSF---------------------------------------TTTAE----REIVRDIKEKLC 218
            ....|                                       |::.|    |.::.:.||.:.
pombe   191 MNIEFPPHYRIARKSVAIQQSGNMANGSADAVKPAVLYPPIQDLTSSYEIFQKRRVIEEWKESVL 255

  Fly   219 YVALD--FEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESC-------- 273
            .| ||  |::    |.||:...|.:|.|||.....|.||||..|.||.|||....|.        
pombe   256 DV-LDTPFDE----AKASSRNPKPFEFPDGVTHKFGQERFRISEILFNPSFSASRSAETTPPQGS 315

  Fly   274 -GIHETVYNSIMKCDVDIRKDLYANSVLSGGTTMYPGIADRMQKEITALAP-STIKIKII-APPE 335
             |:||.||.||:.||.::|..|..|.|::|||::.||:::|:|.|:..||. |.|.:... ....
pombe   316 VGLHELVYQSILACDSELRSPLLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASA 380

  Fly   336 RKYSVWIGGSILASLSTFQQMWISKQEYDESGPG---IVHRKC 375
            ...:||.||||||||..||.:|:|||||||.|..   .|.::|
pombe   381 TSNAVWFGGSILASLDNFQHLWVSKQEYDEVGVDRALFVEKRC 423

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Act88FNP_524367.1 ASKHA_NBD_actin 8..371 CDD:466823 130/423 (31%)
arp42NP_594546.2 ASKHA_NBD_Arp4_ACTL6-like 2..412 CDD:466846 129/420 (31%)

Return to query results.
Submit another query.