DRSC/TRiP Functional Genomics Resources

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Protein Alignment Act88F and swsn-6

DIOPT Version :10

Sequence 1:NP_524367.1 Gene:Act88F / 41885 FlyBaseID:FBgn0000047 Length:376 Species:Drosophila melanogaster
Sequence 2:NP_500801.2 Gene:swsn-6 / 177325 WormBaseID:WBGene00022774 Length:436 Species:Caenorhabditis elegans


Alignment Length:435 Identity:140/435 - (32%)
Similarity:214/435 - (49%) Gaps:71/435 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 DDAGALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYV--------GD--E 58
            |:...||.|.||...:.||||::.|:...||.:.        |.....|..:        ||  :
 Worm     9 DEVSGLVFDAGSQSFRVGFAGEEYPKGDIPSYIA--------VQEALPDDTIEKQEAMEEGDNSK 65

  Fly    59 AQSKR------GILTLKYP---------IEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 108
            .|:||      |...:..|         ::.|:|.:|:..|||..|::.|.|...|.|||||.:|
 Worm    66 VQTKREKNFFIGTTKIIVPRARTNMESFMKEGLIEDWELFEKIVEHSYENILYSNPSEHPVLFSE 130

  Fly   109 APLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGFALP 173
            :..|.:|.|||:|:||||.|..||.|::...|||.:|.|||.|:::|||...:..||:::|:|:.
 Worm   131 SSWNDRARREKLTEIMFEKFQVPAYYLSKNVVLSCFAQGRTHGLMVDSGATQTSVVPVFDGYAVT 195

  Fly   174 HAILRLDLAGRDLTDYLMKILTER------------------GYSFTTTAEREIVRDIKEKLCYV 220
            ||:::..:.|..:|:.|.::|.::                  |.:...|..:.:.:..|....::
 Worm   196 HAVVKCPIGGDLITEQLAQMLDQQKIDVIPTYRIGGKEEVNEGEAPKWTPRKNLPQVTKSYDAFM 260

  Fly   221 ALDFEQEMATA---AASTSLEKS---------YELPDGQVITIGNERFRCPEALFQPSFLGMES- 272
            .....::||..   ...||::..         |..|:|.....|.||.:.||.||...:|..|. 
 Worm   261 KKMLLEDMAATMLQLCDTSIDMDYVDKLPSTPYAFPNGYTKEFGAERIKLPECLFDLGYLKAEGK 325

  Fly   273 ----CGIHETVYNSIMKCDVDIRKDLYANSVLSGGTTMYPGIADRMQKEITALAPSTIKIKIIAP 333
                ..:.:....|....|:|||..|::|..::||.::..|..:|:...:....|.|||:::.|.
 Worm   326 KDGLMTVAQMAAASANLADIDIRPTLFSNVTVTGGNSLILGFTERLNYALATKCPPTIKLRVFAA 390

  Fly   334 P---ERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKC 375
            |   ||||..|||||||.||.||||||:||.||||||..||.:||
 Worm   391 PTQAERKYGAWIGGSILGSLGTFQQMWVSKAEYDESGKSIVEKKC 435

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Act88FNP_524367.1 ASKHA_NBD_actin 8..371 CDD:466823 135/425 (32%)
swsn-6NP_500801.2 ASKHA_NBD_Arp4_ACTL6-like 8..427 CDD:466846 134/425 (32%)

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