DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6118 and psq

DIOPT Version :9

Sequence 1:NP_001097806.1 Gene:CG6118 / 41884 FlyBaseID:FBgn0038339 Length:967 Species:Drosophila melanogaster
Sequence 2:NP_001369078.1 Gene:psq / 36118 FlyBaseID:FBgn0263102 Length:1170 Species:Drosophila melanogaster


Alignment Length:689 Identity:152/689 - (22%)
Similarity:247/689 - (35%) Gaps:227/689 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   392 QYL-LSWNNFHGNMCRGFHSLQKDEKMVDVTIAAGGKIFKAHKLVLSVCSPYFQQIFLENPSSHP 455
            ||. |.|||:...|...|..|::|...||||::......||||:|||.||.|||::.||||..||
  Fly     8 QYFSLRWNNYQNTMTSVFQQLREDLSFVDVTLSCEHGSLKAHKVVLSACSTYFQKLLLENPCKHP 72

  Fly   456 -ILLMADVEASHMAGLLDFMYSGQVNVKYEDLPVFLKVAEAMKIKGL-HTEKNLDSDASDISSPH 518
             |:|.||:..:.:..::||:|.|:::|...:|...|:.||.:||||| .|.:|.| |.:|.::  
  Fly    73 TIILPADIIFTDLKTIIDFVYRGEIDVTESELQGLLRTAEQLKIKGLCETAENAD-DLNDAAT-- 134

  Fly   519 ESDGTECRYERGTHSVNITSG------HAAGYGGAPS---------------------------- 549
                     ...|.|.||...      :||...||||                            
  Fly   135 ---------ATITVSENIQQAVVGNIVNAAIVPGAPSPSLEQQQQHHQQQQQQQAQEQHQQQQVH 190

  Fly   550 SQQ------------------SSPSPSLNGPNRCPTPLSSGGSGNP-NYAGFREHIKSKATLAET 595
            :||                  ||.|.||:|     ..|||..||:. :.||.::..::.:.|..|
  Fly   191 AQQQQQQQQQINAALLTQHGVSSGSVSLSG-----QLLSSSASGSSGSLAGGQQASQTPSGLQPT 250

  Fly   596 FMKN-LNRNNNNNNSSNNYNHLGGSNGSLNLTEADSNSFAILQANSKKMLDSARKQHKYLAKRKI 659
            ..|: |.|:.:.:.||      ||..||    ...|:|     .::::....|...|    .:.|
  Fly   251 PRKSRLKRSKSPDLSS------GGGAGS----SGGSSS-----GSTQQQPQPAHHHH----PQTI 296

  Fly   660 LMHYNTELGGEK-----RLKEMERDRY---------PSAEQHDDALNNNHSHAQDNIMEPIITTI 710
            |:.      |:.     .|::.....|         ..||.|:...|:.|.|....         
  Fly   297 LIQ------GQNPNSIVSLQQTADGNYIPVSGSGDDSDAEDHEHEHNHGHGHGHGG--------- 346

  Fly   711 VPQTPPPSTHNNNFKIRLVESHHLTNNSNNNQNQSSNNNNSSSSPQSNDCNNDEEALN------- 768
                   .||.:...    ..|...:...:..|:.....:|.:||.||..:....|..       
  Fly   347 -------HTHGHGHS----HEHSHDHEHEHKPNKICKTEHSVASPASNSSSASNNAAGVSGVTST 400

  Fly   769 ----LVQIPNANGSRNR----------------------EATPTCATPTPDIQLIKREVKTELSP 807
                :.||..|...::.                      :.||....|:.....:...|....:|
  Fly   401 GQAIVTQIVVARDGKDTKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNP 465

  Fly   808 A---ENLSNNNGHDDEMAGAGFDRKYDDNNNNS----GLDMETDSNNNNSKPGGDNNNGLA---- 861
            :   .:|||..            ...|.:|:.:    .||.....:.::...|.::|:.|.    
  Fly   466 STDTRDLSNTT------------EPLDIDNHLAQQIHRLDQSPMHSISHHHTGDESNSNLVQHIK 518

  Fly   862 --------LALGKHKLLSAINRNIEQDHPDHE--HQDQQDREADHGGNNCNSDDNNNNNHSQHLD 916
                    ||...|.|..|     :|.|..|:  .|.||.::..|            ....|||.
  Fly   519 SEVIEAKHLAAQHHALSQA-----QQQHAHHQAHQQHQQHQQQQH------------QQQQQHLH 566

  Fly   917 LSTIKNIATAEILCGLKSKVLKLEEEQRERERERERERE 955
            ...:           |....|:.:::|::::::..::::
  Fly   567 AQQL-----------LAQSQLQQQQQQQQQQQQHHQQQQ 594

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6118NP_001097806.1 Myb_DNA-bind_4 20..97 CDD:290549
BTB 408..508 CDD:279045 45/101 (45%)
BTB 419..510 CDD:197585 42/92 (46%)
psqNP_001369078.1 BTB_POZ_BAB-like 34..118 CDD:349624 37/83 (45%)
HTH_psq 717..>747 CDD:283007
HTH_psq 767..804 CDD:283007
HTH_psq 821..866 CDD:283007
HTH_psq 873..916 CDD:283007
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 68 1.000 Domainoid score I9675
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1229475at2759
OrthoFinder 1 1.000 - - FOG0000141
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR23110
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
55.020

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