DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Atx2 and CID3

DIOPT Version :9

Sequence 1:NP_732033.1 Gene:Atx2 / 41883 FlyBaseID:FBgn0041188 Length:1084 Species:Drosophila melanogaster
Sequence 2:NP_175819.1 Gene:CID3 / 841857 AraportID:AT1G54170 Length:587 Species:Arabidopsis thaliana


Alignment Length:675 Identity:150/675 - (22%)
Similarity:235/675 - (34%) Gaps:191/675 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 GGASGGISR--------YNSNDNSLRPTNNKAGAGGGNGGAAVRPSAQGVYNNTFFMHSATALVG 70
            |.:|.|.|.        .|:...|:..|.|     |.:..:...||.:      ..::..|..:|
plant     8 GSSSNGFSHRRFEKEAWMNNAQPSVDNTEN-----GWDAESVDTPSQK------LLVYFTTCNIG 61

  Fly    71 SVVEVRLRSGNIYEGVFR--TFSGNFDIALELPACI-------KSKNLPEEGKVPKHIIFPADTV 126
            ..|||.|::|::|.|:|.  ....:|.|.|:: ||:       ||:.:.:...  |.:..|||.:
plant    62 HQVEVHLKNGSVYSGIFHAANVEKDFGIILKM-ACLIRDSRGTKSRTVSKPSS--KLLKIPADEL 123

  Fly   127 VTIVAKDFD-SQYATAGAFQ--------TDGAISDKCNGARPD-EKELEPW--DSGANGDIDIEL 179
            |.::|||.. |..:.:.:.|        ||..||...|   .| |:||:||  |.......|:|.
plant   124 VQVIAKDLPLSSDSVSDSVQCEKPLELLTDSLISQFYN---VDLERELKPWVPDEDVPDCSDLEN 185

  Fly   180 ---DSAANGWDPNEMFRKNENTFGVTSTFDDSLASYTVPLDKGDSLEFKEAEAKAEKLAAEIENN 241
               |....||:   .|..|:..||||||||:.|  ||..|::|...  :|.|.:|.::|.||...
plant   186 VFDDPWKRGWN---QFEVNKTLFGVTSTFDEEL--YTTKLERGPGT--RELEEQALRIAREIVGE 243

  Fly   242 PTCRDRLDLENG---------DEEALFAAVERPSTEQDQRGDRGDRERNDRDREREERD------ 291
            .|....:..|.|         |||..:::|...:...|...:         |.|.||.|      
plant   244 NTRDIHVAEERGLQLSGKFDIDEETKYSSVCATNRFDDTCYE---------DDEEEEEDILLDCC 299

  Fly   292 -----RDRDRDRGNKPRGAGDF---------QLR------ETMSSDRYITKQTRS--------IT 328
                 .|.....|.:|...|.|         .||      ::.|:....|:|..|        :.
plant   300 NNLTFGDSSASDGKEPASTGKFYEDSWGDSLHLRSNKMVDQSWSNSNKHTRQLMSELPSKDFPVA 364

  Fly   329 GPQLSHVGMSSQGSGRDRDTRGDGSMMMQSGGGSGQGGSTQSTAALMLAGGLKGVGPAP------ 387
            |   :::...|| .|..|.::..|:.:.:........|...:              |.|      
plant   365 G---NNIRNESQ-LGEQRKSKFLGASLFKKPSEESVSGFEDA--------------PPPVKPSFI 411

  Fly   388 -------SANASADSSSKYSGGSMVKRKTVPQGGKVMRNNVPTGGSNVSVSQGGNGNSVGQNKGG 445
                   |..|.:::||.:.|.|:.:..         .|:..:..||:.:....:..|:...|..
plant   412 DGRLGLLSDRAKSENSSGWPGSSISRNS---------ENSAASSASNLPILSPSSSGSLSSEKST 467

  Fly   446 YQPSMGMPSQYSYQGNSQIMHGSSQYRNQSHMGGANKLNGDSNANTNKPLPQRQMRQY-QGSQSN 509
            ..|:                              |.:...:.||.:.||.|.....|. |....:
plant   468 LNPN------------------------------AKEFKLNPNAKSFKPSPSATRPQSPQSPVFD 502

  Fly   510 SSLNYGGEPQSLGKPV-HGSHGGHPGQNSNSPPLQTAGPQQQQQQQQQQQQQQQQQQPPQQQQHQ 573
            .|..|...|...|..: :|:....|||  ..|.:.....|....|........|..||....|.:
plant   503 GSFYYPPVPPMPGLHIRYGTGAAFPGQ--QHPMMYNNTTQLSPNQTYYSPNSPQYPQPMMVTQQR 565

  Fly   574 NI-----QPQGQNTQPARQVRTRDN 593
            .|     .|.    ||....:.||:
plant   566 PILFMPPTPY----QPEMPYKGRDS 586

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Atx2NP_732033.1 SM-ATX 61..128 CDD:291131 21/75 (28%)
CID3NP_175819.1 SM-ATX 52..129 CDD:373069 22/79 (28%)
PBP1 152..>283 CDD:227507 46/140 (33%)
LsmAD 205..269 CDD:369058 25/67 (37%)
Amelogenin <486..580 CDD:197891 23/99 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5180
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 112 1.000 Inparanoid score I2056
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001866
OrthoInspector 1 1.000 - - otm2599
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR12854
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
66.050

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