DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbp and Rimbp3

DIOPT Version :10

Sequence 1:NP_001189227.1 Gene:Rbp / 41880 FlyBaseID:FBgn0262483 Length:1844 Species:Drosophila melanogaster
Sequence 2:NP_001028510.2 Gene:Rimbp3 / 239731 MGIID:2685449 Length:1606 Species:Mus musculus


Alignment Length:1625 Identity:346/1625 - (21%)
Similarity:563/1625 - (34%) Gaps:461/1625 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 PSANVEEENRRPEKAAAAASKKQKHKQQKSRPRGSHSMPYESMHHHQSAAAAVAAGTTPNGMLDA 71
            |...:...:|:|......:|:.:..:...|.|.|   :.|:.:....|..|            :|
Mouse   317 PPPQLPSIHRKPNDLQKESSENKPCEASTSSPPG---LDYQELVRQNSELA------------EA 366

  Fly    72 LSLQLR---DAEMRRTEIERA--HQETLAQIRNLSGSARPDAEAVENLQSRARELEKK------- 124
            |.:.:|   |.......:.|.  .:|...:::.|........:..:.|:.|||:|::.       
Mouse   367 LQVLVRRCCDLREENLHLRRKGFSEEAGEKVKWLKVKHAELTDLAQRLEDRARKLQETNLRAMSA 431

  Fly   125 ----VALENV------RCEELQ--IELTSALKAK----QASRSACSGMGSVSSGGGATIPTSASS 173
                .:||.:      .|:..|  .|...||:||    :|.|..|..:       .|.|.....|
Mouse   432 PVPGESLEGLDLSQVFTCQRAQDLSEQAGALQAKDLQIEALRRECHLL-------QARIAADLGS 489

  Fly   174 STVTWAPTISHQDQG---------SEIDIIMAKIEQD-NRVLAELEQPRTSASASMSALPPSSML 228
            |        ||.::|         |::|.:..:.::: .|:..:|...::.|.|...|..||:  
Mouse   490 S--------SHPEEGATCAQWCNISDLDRLQRESQREVLRLQRQLTLHQSKAGAWADAGRPST-- 544

  Fly   229 STVNSEFRTISKSELEEELNRYKR-----AVLGGSGGGGGGVGGGGGGVSALSSGYSSLPQSLAS 288
               .||........||.||...:|     :|                ..:|....|......|.:
Mouse   545 ---PSEITRHQVQALERELGLQRRECEELSV----------------QAAAAERRYEETEAQLQA 590

  Fly   289 TLPNGGASTSLSGTSLGSHSAAAAAAAHSVSAGSGGVVGGGGQGGLSSISALVPNSISGISSSLS 353
            .|.        .|..|...:|...|.|:.:..                    :.:..|.:|.. .
Mouse   591 ALH--------KGARLSEENARLQALANWMKK--------------------MADENSNVSRQ-Q 626

  Fly   354 SHAIQSMQYGTGQTSVEKLLSGTSGITGIPPLPVNIHTMKAMPTALSQRGTIQLYNLQSTTMPLL 418
            ||..|..:........|:||....                   .|..:|..:|.|.         
Mouse   627 SHTRQRQELEATSLLAEQLLQQEG-------------------YAQDRRQQLQHYK--------- 663

  Fly   419 SLNSHNLPPAGSTSYSALGAGGGTSLTHPTMANLGLLDTGTLLGSTGLSGLGVGPSVGGITGATS 483
                                            |..|.|..|  ....:.||...|.....|..|:
Mouse   664 --------------------------------NKALSDLRT--SGKEMQGLQFQPGHPSETSETT 694

  Fly   484 LYGLSGGGGGAGGLGSSYGPPFLDVASSASYPFTA------AALRQASKMKMLDEIDIPLTRYNR 542
            ....|..       ..|..|.|...:.....|...      |.|.|.....:::|........:|
Mouse   695 QASESQA-------RDSGRPTFKTKSEERVLPLPTRDIQPPACLSQQENPVIVEEPAAGPQVSDR 752

  Fly   543 SSPCSPIPPNNWGLDEFTDGLSVSMMHNRGGLALG---------ALDLDTRNH----GLNGASEP 594
            :|       .:..||........|...|.......         :||:||.:.    ..:..|.|
Mouse   753 NS-------TSQSLDSKPQAKKTSSQSNSSSEVESMWATVPSCLSLDMDTASEVDDLEPDSMSTP 810

  Fly   595 -QVDMLDIPGKGRCCVFIARFPYDPPDVHNEFLSMPCREAEGELSLCAGDYLLVWTSGEPQGGYL 658
             ::..|:.|...:..:|:||..|:|       ...|....:|:|.|.||||:.|:...: :.|:.
Mouse   811 LEMRSLEAPIIPKLKLFLARSSYNP-------FEGPSEHCQGKLPLTAGDYVYVFGDMD-EDGFY 867

  Fly   659 DAELLDGRRGLVPASFVQRLVGDDLLEFHQAVLSTLRDAEDGSMQCDTTSLPSLPPHNPLLTHTH 723
            :.||::|:|||||::.|:.:.|                                   :|:|.|  
Mouse   868 EGELVNGQRGLVPSNLVEPISG-----------------------------------SPILNH-- 895

  Fly   724 EDLARLSETHTDLEHDQDDISDN-VPAPKHLTLERQLNKSVLIGWSPPEPVGYNLIDSYHVYVDG 787
                        |.....||... :||.....|::   .|:|:|               .|...|
Mouse   896 ------------LFLKSPDIGPTALPAGHSKVLKK---GSLLLG---------------EVQERG 930

  Fly   788 VLKVTVKANERTRALIEGVDS-TRPHRISVRSVTQNRQTSRDAACTMIIGRDTAHLGPSAVRASH 851
            :.:|. :.:.:|....|.:.: |....:.::|..:.:..||    .::..:....|.|..::..:
Mouse   931 LCQVG-RVDSKTDMAAESLKTKTEACWLGLKSSLEEQSFSR----PLLEAKGAFCLAPMELQLQN 990

  Fly   852 ITCSSAVISWLPANSNHQHVVCVNNVEVRTVKPGMYRHTITGLAPSTQYRVTVRAKHLRAVGQHA 916
            :|.:||.|:|...::.:.|||.:::.|......|:..:|..||.|.|.|||.|..:..|.:.|..
Mouse   991 VTATSATITWASGSNRYPHVVYLDDEEHILTPSGVNHYTFQGLHPGTCYRVRVGVQLPRDLLQVL 1055

  Fly   917 ANVGQTGGAGRPGQEEAPGAYADFRTLTKGLPDPPQEIQLEAGPQDGTILVTWQPV---NRPTST 978
                          .|...:...|.|...|.||||.::.:|.....|.::|:|.||   :..:|.
Mouse  1056 --------------WETTSSTLTFDTPLAGPPDPPLDVLVEHHASPGVLVVSWLPVTIDSAGSSN 1106

  Fly   979 G-PVTGYAVYADGKKVTDINSPTGDHALIDIGKLGV-FNPRAVTIRTKSRDSQSADSAPILIPNT 1041
            | .|||||||.||.|||::...|..:.|::..:|.| .:.:.|::||.|...:|.||.|..||..
Mouse  1107 GVQVTGYAVYVDGFKVTEVADATAGNTLLEFSQLQVPLSCQKVSVRTMSLYGESLDSVPAQIPED 1171

  Fly  1042 VRNAVARRG--PNQMGMGPQLPQGPHGMTVQQQMGGM-----PGQPGQ-QGQHMMGGQQDHGQYD 1098
            ..:.....|  |.....|...|. .|...||..:|..     ||..|: |.:.:....::|.:..
Mouse  1172 FFSCCPFLGAPPFNYTDGNPFPV-CHQKLVQASLGAKSSPRGPGNCGEPQAKFLEAFPEEHPRKH 1235

  Fly  1099 ------PNQMQQQQQQQGQPGQPGHQPDAGSGLLGGLLGGLFSKPTQNQVNQNGYQP----GQPG 1153
                  .:.....|.|.......|::.|..           |.|..||      ::|    ||.|
Mouse  1236 LSLSSLSSDGTNSQAQGPTEAWKGYEKDLS-----------FQKSPQN------HKPPLLFGQSG 1283

  Fly  1154 AQRGMVP---IPGRPQGPQQQQQQPYGPQGPMGGPRFRGPVPGQLNMQGQQMQGQMQGQMQGQMQ 1215
            .:.|..|   |.|                         .|.||.:::..:...|:::        
Mouse  1284 VEEGHAPHICISG-------------------------SPAPGFVHLSSEIGHGKIR-------- 1315

  Fly  1216 GQMSGQMPGQMPGQMPGQMPGQMAGQMAGQMPGQMPGQMPGQMSGQMPGQMMGPRGPLNQQQQQQ 1280
                       ..:.||.....:..|.|..:|....|....|.:            ..:...:::
Mouse  1316 -----------CWEKPGLEKALLQNQYAPMVPPHQQGSSQCQPA------------DFHHVFEEK 1357

  Fly  1281 QQM---QQGQMMPGQ-----QAGQQQAQPGQ-------------------PGQPGQMPGAQKKP- 1317
            :.:   .||...|.|     |.||:|..||.                   .|.|.|:......| 
Mouse  1358 EALCLDSQGTEKPEQRKNKSQNGQRQGTPGSKRECSVLCPAPTNKVIKMTSGSPDQLETDANNPV 1422

  Fly  1318 RYFVAMFDYDPSTMSPNPDGCDEELPFQEGDTIKVFGDKDADGFYWGELRGRRGYVPHNMVSEVE 1382
            |.|:|:||:.|..:|.|.:..:|||.||:|..::|:|..|..|||.||..|..|.:|.::|.|||
Mouse  1423 RVFLALFDHSPLVISVNSEAAEEELAFQKGQLLRVWGSLDLHGFYHGECNGHLGKIPGHLVVEVE 1487

  Fly  1383 DTTASMTAGGQMPGQMPGQ-MGQGQGVGVGGTAQVMPGQGA--PQQSMRNVSRDRWGDIYANMPV 1444
            ..|........:|.|  |. :.:.|...:.|...   .||:  ||.:.|..:  .|       ..
Mouse  1488 VGTQQTDGRWHLPAQ--GHLLSETQREDLEGLTN---SQGSYMPQGNSRTPT--LW-------TP 1538

  Fly  1445 KRMIALYDYDPQELSPNVDAEQVELCFKTGEIILVYGDMDEDGFYMGELDGVRGLVPSNFLADAP 1509
            |.|:|..||||::....|.|:. :|..:.|:::.|||.:|:.|||.||..|.|||||::.|.|.|
Mouse  1539 KTMVAALDYDPRDGRAGVQAKG-KLVLRAGDVVTVYGPVDDKGFYYGEYGGHRGLVPAHLLDDLP 1602

  Fly  1510  1509
            Mouse  1603  1602

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RbpNP_001189227.1 COG4913 <69..>148 CDD:443941 21/106 (20%)
SH3 609..677 CDD:473055 24/67 (36%)
FN3 748..822 CDD:238020 13/74 (18%)
COG3979 844..>1004 CDD:443178 51/163 (31%)
FN3 844..907 CDD:238020 20/62 (32%)
Med15 <1050..>1272 CDD:312941 40/242 (17%)
SH3_RIM-BP_2 1319..1380 CDD:212945 25/60 (42%)
SH3_RIM-BP_3 1446..1507 CDD:212946 26/60 (43%)
Rimbp3NP_001028510.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..27
Smc <29..>488 CDD:440809 36/192 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 41..70
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 217..249
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 295..352 7/37 (19%)
sbcc <379..>670 CDD:129705 67/415 (16%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 677..731 11/60 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 744..781 6/43 (14%)
SH3 826..886 CDD:473055 24/67 (36%)
FN3 <981..>1133 CDD:442628 52/165 (32%)
FN3 982..1043 CDD:214495 19/60 (32%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1234..1255 2/20 (10%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1364..1392 10/27 (37%)
SH3 1424..1485 CDD:473055 25/60 (42%)
SH3 1541..1599 CDD:473055 25/58 (43%)
Blue background indicates that the domain is not in the aligned region.

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