DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbp and tspoap1

DIOPT Version :10

Sequence 1:NP_001189227.1 Gene:Rbp / 41880 FlyBaseID:FBgn0262483 Length:1844 Species:Drosophila melanogaster
Sequence 2:XP_031752585.1 Gene:tspoap1 / 100379872 XenbaseID:XB-GENE-5923196 Length:2329 Species:Xenopus tropicalis


Alignment Length:1480 Identity:324/1480 - (21%)
Similarity:497/1480 - (33%) Gaps:592/1480 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly   580 DLDTRNHGLNGASEPQVDMLDIPGKGRCCVFIARFPYDPPDVHNEFLSMPCREAEGELSLCAGDY 644
            |||..:..|:...|.:     .|.|  ..|::||:.|:|.|..||       ..|.||.|.||:|
 Frog   929 DLDADSISLHPEPESR-----FPAK--LHVYLARYSYNPFDGPNE-------NPEAELPLTAGEY 979

  Fly   645 LLVWTSGEPQGGYLDAELLDGRRGLVPASFVQRLVGDDLLEFHQAVLSTLRD------------- 696
            :.::...:..|.| :.||:||||||||::||:|:..|||:.|....::.|..             
 Frog   980 IYIYGDMDDDGFY-EGELMDGRRGLVPSNFVERVSDDDLIAFQPTEINELSQSSGQDISFLSGSS 1043

  Fly   697 ---AEDGSMQCDTTSLPSLPPHNPLLTHTHEDLARLSETHTDLEHDQDDISDNVPAPKHLTLERQ 758
               :||||      ||..||                .||....|...|.::  ||.|:.|.:.:|
 Frog  1044 NERSEDGS------SLSPLP----------------CETQATSEGASDILA--VPYPRKLAIIKQ 1084

  Fly   759 LNKSVLIGWSPP-EPVGYNLIDSYHVYVDGVLKVTVKANERTRALIEGVD-STRPHRISVRSVTQ 821
            |.:|:::||.|| ...|...|.||::|:|..|:..|:...:|:||||.:: .||.:||||:|||:
 Frog  1085 LARSIVVGWEPPLVTAGTRNIQSYNIYIDNELRQNVQCGGQTKALIEKLELKTRTYRISVQSVTE 1149

  Fly   822 NRQTSRDAACTMIIGRDTAHLGPSAVRASHITCSSAVISWLPANSNHQHVVCVNNVEVRTVKPGM 886
            :..:.| ..||:::|...: |.|:.:|...::.:.|.|:|.|.|||:.|.:.:|:......|.|.
 Frog  1150 DGCSDR-MRCTLLVGHGYS-LAPTQLRVRSLSATCAEITWQPCNSNYSHALYMNDERCGLAKAGT 1212

  Fly   887 YRHTITGLAPSTQYRVTVRAKHLRAVGQHAANVGQTGGAGRPGQEEAPGAYADFRTLTKGLPDPP 951
            |.::.:.|.|||.|.|.|.|...|...:....           :.|.........|.:.|.||.|
 Frog  1213 YWYSFSSLRPSTLYNVKVEAHPQRIPWELPLE-----------RREQKATVIQLTTPSAGPPDAP 1266

  Fly   952 QEIQLEAGPQDGTILVTWQPVN---RPTSTG-PVTGYAVYADGKKVTDINSPTGDHALIDIGKLG 1012
            .::|:|.||..|.:|::|.||.   ..:|.| .||||||||||:||.::.|||....|:.:..|.
 Frog  1267 LDVQVELGPTPGVLLISWLPVTIDAAGSSNGVRVTGYAVYADGQKVLEVTSPTAGSVLVGMSHLQ 1331

  Fly  1013 VFN-PRAVTIRTKSRDSQSADSAPILIPNTVRN-------------------------------- 1044
            :.. .:.::|||.|...:|.||.|..||:.:.|                                
 Frog  1332 LLQVSKEISIRTMSPSGESVDSVPAKIPSALLNNPDCSSLINPFSNSLTSEPAMEKSLDACFEKF 1396

  Fly  1045 ----------------------------------------------------------------- 1044
                                                                             
 Frog  1397 PSKPLSSSSPYSPPATLDACTKAKFSIHTSCSRGKSTDSLPVRISPLLLLSPLSTSSGYCQGSSR 1461

  Fly  1045 ------AVARRGPNQMGMGPQLPQGPHGMTVQQQMGG---------------------------- 1075
                  .|::.|.:: ...|.|||     |....:.|                            
 Frog  1462 SDCLEPVVSQDGTHE-NAPPALPQ-----TASIAVSGSVQPLDSASDSVEVSKISLQEKESTFIQ 1520

  Fly  1076 ----------------MPGQPGQ-------------------------QGQHM------------ 1087
                            ...||..                         :.:|:            
 Frog  1521 ESVELSNTKYSDMKAVTSSQPSSLEIGKTWNDSLTERSTASKEDCSSPETEHLEEENKRRCNREI 1585

  Fly  1088 -------MGGQQDHGQYDPNQMQQQ-----------------------QQQQGQPGQPGHQP--- 1119
                   .|.::....|....::::                       ::::|:..:....|   
 Frog  1586 SIEDFLEEGPEKTANNYTNEGLEEEASLPEPIVSNLEHSPSSTLSDIMEEEEGENPEEEDSPKIN 1650

  Fly  1120 ----------------------DAGSGLLGGLLG---------GLFSKP--TQNQVNQNGYQPGQ 1151
                                  |:...:|..:|.         .|||.|  |:.:..:..|... 
 Frog  1651 KKRQIGAKARCENLSKLDCCETDSDEEILERMLALPLQKHCSKKLFSIPEVTEEEDEEEVYYKA- 1714

  Fly  1152 PGAQRGM--------------------------------------------------------VP 1160
            |.|:..|                                                        .|
 Frog  1715 PLAKTTMHSNDLTSEHCGKGSLLNNKSSCVLEDCALENSALLSQDWDLKPNVLISQHQHENTKTP 1779

  Fly  1161 IPG------------------------------------------------------RPQG---- 1167
            :.|                                                      :.||    
 Frog  1780 LFGSSTCNPKRSYCWTDRANSCPESNRKRQGDAREQCSRMVANSSQTVFFNPRSHNQKEQGLHTA 1844

  Fly  1168 ---------------PQQQQQQP---------------YGPQG---------------------- 1180
                           ||:..|.|               ||..|                      
 Frog  1845 AKNTPQVNQKNGKSNPQKCFQSPQYSDYSDVNIKRASSYGSPGGLEIDIEYDTEDEEDLSSLKCS 1909

  Fly  1181 ---------------------------PMGGPRFRGPVPGQLNMQGQQMQGQMQGQMQGQMQGQM 1218
                                       |:...:.|..:..|:|:|....:..:...:||..||..
 Frog  1910 NHSRPNIWEDSSQTERDGWSDCSSQSEPIRHTKKRRALKKQVNVQDNSAEITLGHNIQGSRQGSR 1974

  Fly  1219 SGQMPGQMPGQMPGQMPGQMAGQMAGQMPGQMPGQMPGQMSGQMPGQMMGPRGPLNQQQQQQQQM 1283
            :..:..::.........|:......| ..|..|..:|.......||:..|               
 Frog  1975 NDDLSSRLGSNTIVHTSGRDGAGKDG-WNGNTPSSLPDYQEAPSPGKATG--------------- 2023

  Fly  1284 QQGQMMPGQQAG---------QQQAQPGQPGQPGQMPGAQKKPRYFVAMFDYDPSTMSPNPDGCD 1339
             ..|:..|.::.         .|:..|.:...| ..|...:..|.|||:|||||..||||||..:
 Frog  2024 -TSQLTSGSESEAAYYISPEYHQEVIPHKEQSP-LKPQKLETARIFVALFDYDPVIMSPNPDAYE 2086

  Fly  1340 EELPFQEGDTIKVFGDKDADGFYWGELRGRRGYVPHNMVSEV----EDTTASMTAGGQMPGQMPG 1400
            ||:||:||..:::||||||||||.||..|:.||:|.|||||:    ||..|.:...|.:...   
 Frog  2087 EEVPFKEGQILQIFGDKDADGFYHGECAGKTGYIPCNMVSELHIQNEDMGAELLKRGWVTSP--- 2148

  Fly  1401 QMGQGQGVGVGGTAQVMP---GQGAPQQSMRNVSRDRWGDIYANMPVKRMIALYDYDPQELSPNV 1462
                   ..:.....::|   ....|::| |.:..|      .::| |:|:|::||:|:|.|||:
 Frog  2149 -------TILNDLVDIVPVPDVTDVPEKS-RKIQHD------LSVP-KKMVAIFDYNPRENSPNM 2198

  Fly  1463 DAEQVELCFKTGEIILVYGDMDEDGFYMGELDGVRGLVPSNFLADAPDQYNNQMGPGGVAGRGGL 1527
            |.| .||.|..|::|.|:|.|||||||.|||:|:|||||||||..|..|.........:..|...
 Frog  2199 DVE-AELNFTAGDLITVFGPMDEDGFYYGELNGLRGLVPSNFLESAQPQVEESDAQMALHARDNT 2262

  Fly  1528 SQRGRGQGPGARGPPPPPRDNMMPGMGGRGQPGKNARPASPTLLDNTGHP 1577
            ..|    ......||..|.::          |....:.|:..|:....||
 Frog  2263 ELR----VAAPVDPPDSPTED----------PISCGQAANSKLMSERQHP 2298

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RbpNP_001189227.1 COG4913 <69..>148 CDD:443941
SH3 609..677 CDD:473055 29/67 (43%)
FN3 748..822 CDD:238020 32/75 (43%)
COG3979 844..>1004 CDD:443178 55/163 (34%)
FN3 844..907 CDD:238020 21/62 (34%)
Med15 <1050..>1272 CDD:312941 54/561 (10%)
SH3_RIM-BP_2 1319..1380 CDD:212945 39/60 (65%)
SH3_RIM-BP_3 1446..1507 CDD:212946 38/60 (63%)
tspoap1XP_031752585.1 SMC_prok_B <21..729 CDD:274008
Smc <610..>779 CDD:440809
SH3_RIM-BP_1 951..1011 CDD:212947 29/67 (43%)
FN3 1076..1154 CDD:238020 31/77 (40%)
FN3 1169..1233 CDD:238020 21/63 (33%)
SH3_RIM-BP_2 2066..2127 CDD:212945 39/60 (65%)
SH3_RIM-BP_3 2182..2242 CDD:212946 38/60 (63%)
Blue background indicates that the domain is not in the aligned region.

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