DRSC/TRiP Functional Genomics Resources

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Protein Alignment h-cup and C14B1.8

DIOPT Version :10

Sequence 1:NP_650462.1 Gene:h-cup / 41879 FlyBaseID:FBgn0038334 Length:256 Species:Drosophila melanogaster
Sequence 2:NP_497753.1 Gene:C14B1.8 / 182593 WormBaseID:WBGene00007579 Length:231 Species:Caenorhabditis elegans


Alignment Length:272 Identity:54/272 - (19%)
Similarity:107/272 - (39%) Gaps:86/272 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDSSVPSGAESGLIKEYKDFAKCLDELEFKTDELLIDAKMVDQELANCHKFREDQLLKHLTEKND 65
            ||:  ||.....|::...|......:.|:..|.:|..|..|...:::.:|:  ::||:.:.:...
 Worm     1 MDN--PSKEIDLLLQSSYDMTILTKQGEYNVDSMLSRAHHVASRISSMYKY--EKLLQDMQDLTV 61

  Fly    66 DDEQMQLL-----RENIELKATGVEFQHGIELIMEKYREHSEGDMLIDTYQLRE---HYLAGLSK 122
            :..:.:|:     |||.::.|           :.::.|            ||||   .|||.:..
 Worm    62 NGNRRKLILNDLQRENKQIMA-----------LQDENR------------QLRETTQEYLATMRN 103

  Fly   123 VVEEQDARIERMVDVMKLTVDFEDRSSAENQQIICQL--TDENEQLRR----------------- 168
            :::.. |.||..:::.::..|.:|   |:..:||.::  ||:..:|::                 
 Worm   104 ILDSH-AEIEGSIEMGQMNSDIDD---ADIDRIIFEMANTDQEARLKKKALEMELMMDDLEKMRK 164

  Fly   169 ----QLQISTT-----DELFRQGALSSSESSTQIGPNDSLDSSATRENSIYSIDSFLSCLSPSSV 224
                :||::..     .|||:....|:..:                 |||  ::|.:..:|....
 Worm   165 EEYQELQLAVQRNKNYKELFKLACFSNQSA-----------------NSI--LNSAMKIISEGDG 210

  Fly   225 EDDSECSSNNSL 236
            .||.|...|..|
 Worm   211 FDDDEAQENEDL 222

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
h-cupNP_650462.1 SIKE 12..173 CDD:461735 36/191 (19%)
C14B1.8NP_497753.1 None

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