DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Trax and tsnax

DIOPT Version :9

Sequence 1:NP_650454.2 Gene:Trax / 41871 FlyBaseID:FBgn0038327 Length:298 Species:Drosophila melanogaster
Sequence 2:NP_001006778.1 Gene:tsnax / 448467 XenbaseID:XB-GENE-947707 Length:297 Species:Xenopus tropicalis


Alignment Length:293 Identity:103/293 - (35%)
Similarity:158/293 - (53%) Gaps:29/293 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MPKNGGAGHRNTAP-----RKRQIPAAQLDEDSPIVQQFRIYSNELIMKHDRHERIVKLSRDITI 60
            |...|....:|..|     .:|:.....:...|.::..|:.:.::|..:||::||:|||.|||||
 Frog     1 MSAKGSGSFKNRKPDTVQRSQRKDEKGSVCSSSAVLMSFKAFQHDLDARHDKYERLVKLGRDITI 65

  Fly    61 ESKRIIFLLHSIDSRKQNKEKVLEEARQRLNKLIAV--NFRAVALELRDQDVYQFRSSYSPGLQE 123
            ||||.|||||.:.| ..|||.||.||.   .||:||  ..:.:|.||..:|:||:..:::|||||
 Frog    66 ESKRTIFLLHRMIS-DHNKEDVLSEAE---TKLLAVRQKIKEIAEELVGEDMYQYHRAFTPGLQE 126

  Fly   124 FIEAYTYMEYLCHEDAEGENETKSVSDWQAIQAVMQYVEE------SSQPKEEPTEGEDVQAIAQ 182
            ::||.|:..::........||......::.::.:.....|      ||.|....::   :.|:: 
 Frog   127 YVEAITFKHFIESRTLVTINEINKQLIFEDLENMPMITTESFCGNLSSSPDNRHSK---ISALS- 187

  Fly   183 VESPKKFQFFVDPTEYILGLSDLTGELMRRCINSLGSGDTDTCLDTCKALQHFYSGYISLNCQRA 247
                    ..|.|.:|:||::||||||||.||:|:|:||.||..:....|:..:.|:..:.....
 Frog   188 --------IQVTPVDYLLGVADLTGELMRYCISSVGNGDIDTPFELSCFLRQVFDGFSYIGNTGP 244

  Fly   248 RELWRKITTMKQSVLKAENVCYNVKVRGGEAAK 280
            .|:.|||..:|||:.|.||.||.:||||.|..|
 Frog   245 YEISRKIHVLKQSLSKVENACYALKVRGSEIPK 277

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TraxNP_650454.2 Translin-like 37..267 CDD:271348 87/237 (37%)
tsnaxNP_001006778.1 Translin 51..272 CDD:366871 90/236 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 147 1.000 Domainoid score I4499
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H4374
Inparanoid 1 1.050 161 1.000 Inparanoid score I4120
OMA 1 1.010 - - QHG55787
OrthoDB 1 1.010 - - D1213910at2759
OrthoFinder 1 1.000 - - FOG0006191
OrthoInspector 1 1.000 - - oto102797
Panther 1 1.100 - - LDO PTHR10741
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1561
SonicParanoid 1 1.000 - - X4467
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1212.110

Return to query results.
Submit another query.