DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Atg4b and Atg4d

DIOPT Version :9

Sequence 1:NP_650452.1 Gene:Atg4b / 41868 FlyBaseID:FBgn0038325 Length:668 Species:Drosophila melanogaster
Sequence 2:NP_001094483.2 Gene:Atg4d / 686505 RGDID:1596392 Length:473 Species:Rattus norvegicus


Alignment Length:628 Identity:209/628 - (33%)
Similarity:286/628 - (45%) Gaps:215/628 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    70 RVPSPSPVSTSGANLNLKTENAATATPQRKISTSSRFMNAFSQLYGGGNSGPSCGHVEQHNEEPG 134
            |:|.||.:..||:.:      ||                     .|...:.|:         ||.
  Rat    32 RIPDPSNLGPSGSGV------AA---------------------LGSTGTDPA---------EPD 60

  Fly   135 DLSANRTPTKGMESKLVAMWHNVKYGWSGKMRQTSFSKEQPVWLLGRCYHRRFTPPVSMESSITE 199
            ::...:|       |.:..|:||||||:.|.| |||||...|.|.|||||               
  Rat    61 EVDKFKT-------KFLTAWNNVKYGWAVKSR-TSFSKISSVHLCGRCYH--------------- 102

  Fly   200 LPSGADTTPDNATSAFDSIQATSTSTSLYPALNPQQIDEIVVPQELGMDAVENQVGEQPWEEGIE 264
                           |:.                                          |..|:
  Rat   103 ---------------FEG------------------------------------------EGDIQ 110

  Fly   265 GFRRDFYSRIWMTYRREFPIMNGSNYTSDCGWGCMLRSGQMLFAQGLICHFLGRSWRYDSESQLH 329
            .|:|||.||:|:||||:||.:.|| .|||||||||||||||:.||||:.|||.|.||:...:.|.
  Rat   111 RFQRDFVSRLWLTYRRDFPPLAGS-LTSDCGWGCMLRSGQMMLAQGLLLHFLPRDWRWVEGTGLA 174

  Fly   330 ST----------YE-------------------DNMHKKIVKWFGDSSSKSSPFSIHALVRLGEH 365
            |:          |.                   |..|::||.||.|  ...:||.:|.||.||:.
  Rat   175 SSEMPGPASPSRYRGPGRRGPLRCAQGALEMEPDRWHRRIVSWFAD--HPQAPFGLHRLVELGQS 237

  Fly   366 LGKKPGDWYGPASVSYLLKHALEHAAQENADFDNISVYVAKDCTIYLQDIEDQCSIPEPAPKPHV 430
            .|||.||||||:.|:::|:.|:|..    ::...:.|||::|||:|..|:....|.|:|..:   
  Rat   238 SGKKAGDWYGPSVVAHILRKAVESC----SEVTRLVVYVSQDCTVYKADVARLVSWPDPTAE--- 295

  Fly   431 PWQQAKRPQAETTKTEQQQHWKSLIVLIPLRLGSDKLNPVYAHCLKLLLSTEHCLGILGGKPKHS 495
                                |||:::|:|:|||.:.|||||..|:|.||.:|.||||:||||:||
  Rat   296 --------------------WKSVVILVPVRLGGETLNPVYVPCVKELLRSELCLGIMGGKPRHS 340

  Fly   496 LYFVGFQEDRLIHLDPHYCQEMVDVNQENFSLHSFHCKSPRKLKASKMDPSCCIGFYCATKSDFD 560
            |||:|:|:|.|::|||||||..|||||.||.|.||||.||||:..:||||||.:|||...:.:|:
  Rat   341 LYFIGYQDDFLLYLDPHYCQPTVDVNQANFPLESFHCTSPRKMAFAKMDPSCTVGFYAGNRKEFE 405

  Fly   561 NFMESVQLYLHPMRCASGATVDKAAGSHHTTPQSSHQTEQTEMNYPLFSFSRGRCMDHERDEMSD 625
            .....:      ||..|.::|                ||:    ||:|:.:.|...||..|.:..
  Rat   406 TLCSEL------MRILSSSSV----------------TER----YPMFTVAEGHAQDHSLDALCT 444

  Fly   626 SLYKPLIKQVASLAQELGAQLAPPQHGDEHDQDDSESEEFVLL 668
            .|.:|.::.              |..|.........||:||.|
  Rat   445 QLSQPTLRL--------------PCTGRLLKAKRPSSEDFVFL 473

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Atg4bNP_650452.1 Peptidase_C54 264..565 CDD:281417 149/329 (45%)
Atg4dNP_001094483.2 Peptidase_C54 110..410 CDD:281417 149/329 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166341342
Domainoid 1 1.000 302 1.000 Domainoid score I1352
eggNOG 1 0.900 - - E1_KOG2674
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H13156
Inparanoid 1 1.050 364 1.000 Inparanoid score I2106
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D332531at33208
OrthoFinder 1 1.000 - - FOG0000466
OrthoInspector 1 1.000 - - otm45424
orthoMCL 1 0.900 - - OOG6_100501
Panther 1 1.100 - - LDO PTHR22624
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X289
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1312.800

Return to query results.
Submit another query.