DRSC/TRiP Functional Genomics Resources

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Protein Alignment Atg4b and atg-4.2

DIOPT Version :9

Sequence 1:NP_650452.1 Gene:Atg4b / 41868 FlyBaseID:FBgn0038325 Length:668 Species:Drosophila melanogaster
Sequence 2:NP_502208.1 Gene:atg-4.2 / 3565022 WormBaseID:WBGene00014080 Length:521 Species:Caenorhabditis elegans


Alignment Length:683 Identity:171/683 - (25%)
Similarity:266/683 - (38%) Gaps:227/683 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 IVEGSRI----CGQDADPLSLPLVEDGAIEEE----QAAPIQTI----HRTVFAVPRVPSPSPVS 78
            |...||:    |..::.     |.:|...|.|    ..||.:.:    .|.|.....|...:|.|
 Worm    11 IASSSRLPRKYCSSESS-----LSDDDGHEIEHVLKHGAPEEALTPDTERMVVLGQDVVQSAPAS 70

  Fly    79 -TSGANLNLKTE-NAATATPQRKISTSSRFMNAFSQLYGGGNSGPSCGHVEQHNEEPGDLSANRT 141
             ..|.||:..:: .:|.|:....|..||...:..           |.|.:|:|::          
 Worm    71 LVPGGNLSWMSKIKSAGASMMGSIRPSSSSQDVH-----------STGEIEKHSK---------- 114

  Fly   142 PTKGMESKLVAMWHNVKYG--WSGKMRQTSFSKEQPVWLLGRCYHRRFTPPVSMESSITELPSGA 204
              |..:::|.:.|:|:||.  |... |...:..|..|..|||.|                     
 Worm   115 --KKWKARLWSTWNNIKYSSTWMSD-RSDEYGGENDVVFLGRRY--------------------- 155

  Fly   205 DTTPDNATSAFDSIQATSTSTSLYPALNPQQIDEIVVPQELGMDAVENQVGEQPWEEGIEGFRRD 269
                               |||                           |.|.....|.|.|..|
 Worm   156 -------------------STS---------------------------VDESGLRSGFENFCSD 174

  Fly   270 FYSRIWMTYRREFPIMNGSNYTSDCGWGCMLRSGQMLFAQGLICHFLGRSWRYD----SESQLHS 330
            :|||:|:|||.:||.:..::.|:|||||||:|:.||:.||.::.:..||.||:.    |....|.
 Worm   175 YYSRLWITYRTDFPALLDTDTTTDCGWGCMIRTTQMMVAQAIMVNRFGRDWRFTRRKRSHVAAHG 239

  Fly   331 TYEDNMHKKIVKW-----FGDSSSKSSPFSIHALV---RLGEHLGKKP-GDWYGPASVSYLLKHA 386
            ..:|...:||.:|     |.|  ..::|..||.:|   .:|:  |||. |.||.|:...:::|.|
 Worm   240 DEDDFDREKIQEWMILKLFED--KPTAPLGIHKMVGIAAMGK--GKKAVGSWYSPSEAVFIMKKA 300

  Fly   387 LEHAAQENADFDNISVYVAKDCTIYLQDIEDQCSIPEPAPKPHVPWQQAKRPQAETTKTEQQQHW 451
            |..::....  .|.::.::.|..::::|||                       .||      ::|
 Worm   301 LTESSSPLT--GNTAMLLSIDGRVHIRDIE-----------------------VET------KNW 334

  Fly   452 -KSLIVLIPLRLGSDKLNPVYAHCLKLLLSTEHCLGILGGKPKHSLYFVGFQEDRLIHLDPHYCQ 515
             |.||::|.:|||:.:|||:|...|..|.:.|.||||.||:|.||.:|||:..|::|:||||...
 Worm   335 MKKLILVIVVRLGAAELNPIYVPHLMRLFAMESCLGITGGRPDHSSWFVGYYGDQIIYLDPHVAH 399

  Fly   516 EM--VDVNQENFSL------------HSFHCKSPRKLKASKMDPSCCIGFYCATKSDFDNFMESV 566
            |.  :|:|.....:            .|:||:...|:....|||||.:.|...::..|||.|..:
 Worm   400 EYIPIDINPNTNVVDSDSKKAKKCPEKSYHCRLLSKMHFFDMDPSCALCFQFESREQFDNDMRQL 464

  Fly   567 QLYLHPMRCASGATVDKAAGSHHTTPQSSHQTEQTEMNYPLFSFSRGRCMDHERDEMSDSLYKPL 631
            .|         ...:|...|..|.                         |...||.|...:|   
 Worm   465 NL---------SQFIDIDQGEEHG-------------------------MKRVRDPMFSVVY--- 492

  Fly   632 IKQVASLAQELGAQLAPPQHGDEHDQDDSESEE 664
                       |.:..||    .::::.||:|:
 Worm   493 -----------GERRQPP----SYEREVSETEQ 510

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Atg4bNP_650452.1 Peptidase_C54 264..565 CDD:281417 109/328 (33%)
atg-4.2NP_502208.1 Peptidase_C54 168..459 CDD:367485 106/325 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 175 1.000 Domainoid score I2180
eggNOG 1 0.900 - - E1_KOG2674
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H13156
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D332531at33208
OrthoFinder 1 1.000 - - FOG0000466
OrthoInspector 1 1.000 - - oto19312
orthoMCL 1 0.900 - - OOG6_100501
Panther 1 1.100 - - LDO PTHR22624
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R109
SonicParanoid 1 1.000 - - X289
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1312.810

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