DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tmtc4 and tmtc1

DIOPT Version :10

Sequence 1:NP_650451.1 Gene:Tmtc4 / 41867 FlyBaseID:FBgn0038324 Length:705 Species:Drosophila melanogaster
Sequence 2:XP_001922025.3 Gene:tmtc1 / 555449 ZFINID:ZDB-GENE-070705-219 Length:872 Species:Danio rerio


Alignment Length:789 Identity:252/789 - (31%)
Similarity:375/789 - (47%) Gaps:121/789 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 AILVLICLLCYGCGGLSGAKFVFDDTVAIVKNRDVNSLPTNWTAIFTHDFWGASLLSSDSHKSFR 81
            |.||.:|.|||. ..|.| :||.||..||..|.||.. .::..:|||:||||..:..:.||||:|
Zfish    35 AALVAVCALCYS-NSLWG-EFVHDDIWAITNNPDVKP-GSSLRSIFTNDFWGKRMADNTSHKSYR 96

  Fly    82 PLTTLMFHCEYALLGLSAAHMKFLNLLLHCVNT-LLMWRLIRSLYVPEVSTARWAILSAALFAAH 145
            ||..|.|.....|.||:......:|:.||||.| |||:...:.::    ..:.::.|:|.||:.|
Zfish    97 PLCILTFKLNILLGGLTPFFFHLVNVFLHCVVTALLMYTCQQCVF----EDSNFSFLTALLFSVH 157

  Fly   146 PIHTEAVSGVVGRAELMFGMIHLLCLLLTVANTGRLG-----PQTG-----GLIMLLTAVGMLFK 200
            |||||||||:||||:::..|:.||..|..:.:...:.     |.|.     .|.:||....||.|
Zfish   158 PIHTEAVSGIVGRADVLASMLFLLAFLSYIRSVSPIRSADEFPPTVCVWSLALSLLLGTCAMLVK 222

  Fly   201 ESAVTIPMSCVLLDYF----QNGYYHL---RFKDQWSLLRTRISYLF------YLLGTLGLLTAR 252
            |:.||:...|||.|:.    :....||   |.|:     ..|||..|      ..|....:::.|
Zfish   223 ETGVTVFGVCVLYDFLVLCRKPLILHLSRSRLKE-----LGRISSPFVKRACVVSLHVTVIMSVR 282

  Fly   253 LWWQDFETPTFKEVDNPVAHNEHVLTRGLSQQYLLVMNIWLMLCPHWLCYDWALGCVKLVTNIWD 317
            ||......|.|.|.|||.:.:.::|||.|:..|||..|.||:|.|..|||||.:|.:.||.::||
Zfish   283 LWLMGGSMPLFSEQDNPASFSPYLLTRFLTYCYLLAFNAWLLLAPIMLCYDWQVGSIPLVESLWD 347

  Fly   318 LRLQGVIGFYSIVLVALMN----FRRLPGMMLALGL--MIVPFLPASGIIC-VGFVIAERTLYVP 375
            .|....:....::|...:|    .:::.|..:.:||  ::.||:|||.:.. ||||:|||.||:|
Zfish   348 GRNIASLTLALVMLALSLNCVTCLQKMKGKEVLVGLLFLVFPFIPASNLFFRVGFVVAERVLYMP 412

  Fly   376 SIGFCLLSIYGFLYWYDSSTENTHWRTALRILLMLLFSVMMVRTRQRATDWLNEEQLFKSALQVC 440
            |:|:|:|.::|....|  |..:.....||.:.::::..:...:|.|:...||:.|.||:|.:|..
Zfish   413 SMGYCILVVHGLNRLY--SVVSRWGAAALTVSMLVVLLLFSWKTVQQNEIWLSREALFRSGIQTL 475

  Fly   441 PDNAKVHYNIARLATDMGNNTKAFQHYHRAIELYPNYESALMNLGNLYREHGQLSTAEEYIRLAL 505
            |.|||||||.|....|.|.|.:|..||..|:.|||.:.|||.|||.|..   |...||.|.|.||
Zfish   476 PHNAKVHYNYANFLKDKGRNQEAIYHYKTALRLYPRHASALNNLGTLTH---QAEEAEVYYRRAL 537

  Fly   506 QAYPAFPAAWMNLGIVQSAQGKYDKALASYEKALKYRANFAVCYYNMGNLYLEQKRYAEA----- 565
            ...|....|..|||.:..:|||.::|....::::::..:||..|.::.:||.:|....||     
Zfish   538 DINPQHNRALFNLGNLLKSQGKEEEAERMLKESIRFGPHFADAYSSLASLYADQGHSKEANEIYT 602

  Fly   566 -----------LH------------------HWQHAVALNP-------------------RQPKA 582
                       ||                  |:|.||.|.|                   ::.:.
Zfish   603 KGIENCPESSDLHNNYGVFLVDTGRGDRAAFHYQEAVRLKPAHYVAMVNLGRLLRSSNDNKEAEL 667

  Fly   583 W----------ANILTMLD----NKGLQDDALRISNQALQHLPNDVSILFIRANVLGKLKHYTEA 633
            |          .:|||.|.    |.|..::||.:..:|....|:...|....|.||......|||
Zfish   668 WYKRALQVVRKVDILTPLGALYYNTGRYEEALEVYREASTLQPDSTDIWLALAQVLAMAGRSTEA 732

  Fly   634 EAIYKRVIELEPHNTLYHTNLGVLYHRWDKTQEAIEAYRTAISISAARATTARE------NLSKL 692
            |.:...:|....:....:..|..:|.:.....||::|.:||:...::......|      |..:.
Zfish   733 EKMTLGIISKTSNCIECYRLLSAIYSKQGNHTEALDALKTALQQESSEPAVRAELHFSMGNQLRE 797

  Fly   693 LKRLEREAQ 701
            :..|:|..|
Zfish   798 MNELDRAFQ 806

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tmtc4NP_650451.1 TMTC_DUF1736 258..331 CDD:462468 29/72 (40%)
LapB 431..675 CDD:442196 88/310 (28%)
TPR repeat 444..472 CDD:276809 14/27 (52%)
TPR repeat 480..506 CDD:276809 12/25 (48%)
TPR repeat 511..541 CDD:276809 8/29 (28%)
TPR repeat 546..574 CDD:276809 12/61 (20%)
TPR repeat 580..608 CDD:276809 10/41 (24%)
TPR repeat 614..642 CDD:276809 8/27 (30%)
TPR repeat 647..677 CDD:276809 7/29 (24%)
tmtc1XP_001922025.3 TMTC_DUF1736 287..361 CDD:462468 29/73 (40%)
TPR repeat 479..507 CDD:276809 14/27 (52%)
LapB 483..735 CDD:442196 71/254 (28%)
TPR repeat 512..539 CDD:276809 14/29 (48%)
TPR repeat 544..572 CDD:276809 8/27 (30%)
TPR repeat 578..606 CDD:276809 7/27 (26%)
TPR repeat 611..641 CDD:276809 6/29 (21%)
TPR repeat 646..674 CDD:276809 1/27 (4%)
LapB 652..872 CDD:442196 32/155 (21%)
TPR repeat 712..742 CDD:276809 9/29 (31%)
TPR repeat 747..775 CDD:276809 7/27 (26%)
TPR repeat 784..814 CDD:276809 5/23 (22%)
TPR repeat 819..846 CDD:276809
Blue background indicates that the domain is not in the aligned region.

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