back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment CG5038 and sxc

DIOPT Version :9

Sequence 1:	NP_650451.1	Gene:	CG5038 / 41867	FlyBaseID:	FBgn0038324	Length:	705	Species:	Drosophila melanogaster
Sequence 2:	NP_523620.1	Gene:	sxc / 35486	FlyBaseID:	FBgn0261403	Length:	1059	Species:	Drosophila melanogaster

Alignment Length:	384	Identity:	97/384 - (25%)
Similarity:	159/384 - (41%)	Gaps:	84/384 - (21%)

- Green bases have known domain annotations that are detailed below.

  Fly   390 WYDSSTENTHWRTALRILLMLLFSVMMVRTRQRATDWLNEEQLFKS-ALQVCPDNAKVHYNIARL 453
            |...|| ||.        ::||.|.:..:.|:     |::...|.: |::..|..|:.:.|:..:
  Fly    77 WRQDST-NTG--------VLLLLSSIHFQCRR-----LDKSAQFSTLAIKQNPVLAEAYSNLGNV 127

  Fly   454 ATDMGNNTKAFQHYHRAIELYPNY-----------------ESALM-----------------NL 484
            ..:.|...:|..:|.||:.|.|::                 |||:.                 :|
  Fly   128 FKERGQLQEALDNYRRAVRLKPDFIDGYINLAAALVAARDMESAVQAYITALQYNPDLYCVRSDL 192

  Fly   485 GNLYREHGQLSTAEEYIRLALQAYPAFPAAWMNLGIVQSAQGK---------------------- 527
            |||.:..|:|..|:.....|::..|.|..||.|||.|.:|||:
  Fly   193 GNLLKALGRLEEAKACYLKAIETCPGFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAY 257

  Fly   528 ------------YDKALASYEKALKYRANFAVCYYNMGNLYLEQKRYAEALHHWQHAVALNPRQP 580
                        :|:|:|:|.:||....|.||.:.|:..:|.||.....|:..::.|:.|.|..|
  Fly   258 INLGNVLKEARIFDRAVAAYLRALNLSPNNAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPNFP 322

  Fly   581 KAWANILTMLDNKGLQDDALRISNQALQHLPNDVSILFIRANVLGKLKHYTEAEAIYKRVIELEP 645
            .|:.|:...|..||...:|....|.||:...|....|...||:..:..:..||..:|.:.:|:.|
  Fly   323 DAYCNLANALKEKGQVKEAEDCYNTALRLCSNHADSLNNLANIKREQGYIEEATRLYLKALEVFP 387

  Fly   646 HNTLYHTNLGVLYHRWDKTQEAIEAYRTAISISAARATTARENLSKLLKRLEREAQVMQ 704
            .....|:||..:..:..|.:||:..|:.||.|....| .|..|:...||.|:..:..:|
  Fly   388 DFAAAHSNLASVLQQQGKLKEALMHYKEAIRIQPTFA-DAYSNMGNTLKELQDVSGALQ 445

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.