DRSC/TRiP Functional Genomics Resources

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Protein Alignment Surf4 and Surf4

DIOPT Version :9

Sequence 1:NP_477222.1 Gene:Surf4 / 41864 FlyBaseID:FBgn0019925 Length:270 Species:Drosophila melanogaster
Sequence 2:NP_001029040.1 Gene:Surf4 / 619346 RGDID:1561980 Length:269 Species:Rattus norvegicus


Alignment Length:266 Identity:160/266 - (60%)
Similarity:210/266 - (78%) Gaps:0/266 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 NEYIAKTEDVAEQVIKRGKNVLPTVARLCLIATFFEDGLRMYIQWNEQREYMDMSWGCGKFLATV 69
            |:.:...||.|:|.::..|..||.|||||||:||.|||:||:.||:|||:|:|.:|.||..||:.
  Rat     4 NDLMGTAEDFADQFLRVTKQYLPHVARLCLISTFLEDGIRMWFQWSEQRDYIDTTWSCGYLLASS 68

  Fly    70 FVLVNLLGQLGGCGMVMARFKVDIAVGLLFFIVVLQTVAYSILWDFQFLLRNFALIGALLLVLAE 134
            ||.:||||||.||.:|::|..|..|...||.|:.|||:|||||||.:||:||.||.|.|||:|||
  Rat    69 FVFLNLLGQLTGCVLVLSRNFVQYACFGLFGIIALQTIAYSILWDLKFLMRNLALGGGLLLLLAE 133

  Fly   135 ARIEGRSLFAGVPSMGENKPKNFMQLAGRILLAFMFITLIRFELSVWQVIQDIIGSILMVLVVLG 199
            :|.||:|:|||||:|.|:.||.:|||.||:||..||:||:.|:.|.:.:||:|:|:.||:||.:|
  Rat   134 SRSEGKSMFAGVPTMRESSPKQYMQLGGRVLLVLMFMTLLHFDASFFSIIQNIVGTALMILVAIG 198

  Fly   200 YKTKLSALILVALLTILNLYHNAWWTIPSYKPLRDFLKYDFFQTLSVIGGLLMIVSLGPGGVSMD 264
            :||||:||.||..|..:|:|.||:||||.|||:.||||||||||:|||||||::|:|||||||||
  Rat   199 FKTKLAALTLVVWLFAINVYFNAFWTIPVYKPMHDFLKYDFFQTMSVIGGLLLVVALGPGGVSMD 263

  Fly   265 EHKKKW 270
            |.||:|
  Rat   264 EKKKEW 269

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Surf4NP_477222.1 SURF4 5..270 CDD:111019 159/264 (60%)
Surf4NP_001029040.1 SURF4 4..269 CDD:111019 159/264 (60%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166337414
Domainoid 1 1.000 207 1.000 Domainoid score I2783
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H6052
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1272733at2759
OrthoFinder 1 1.000 - - FOG0003735
OrthoInspector 1 1.000 - - otm45230
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR23427
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2591
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
109.950

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