DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Surf4 and T02E1.7

DIOPT Version :9

Sequence 1:NP_477222.1 Gene:Surf4 / 41864 FlyBaseID:FBgn0019925 Length:270 Species:Drosophila melanogaster
Sequence 2:NP_492235.1 Gene:T02E1.7 / 187988 WormBaseID:WBGene00011379 Length:269 Species:Caenorhabditis elegans


Alignment Length:285 Identity:90/285 - (31%)
Similarity:146/285 - (51%) Gaps:38/285 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 NEYIAKTEDVAEQVIKRGKNVLPTVARLCLIATFFEDGLRMYIQWNEQREYMDMSWGCGKFLATV 69
            |..|.:.||..|.:.:..:.||||:.||.||:||.|||||:....::...:...:||.....:..
 Worm     4 NVVITRCEDYTETLARNTRKVLPTIGRLLLISTFVEDGLRLLFNTHDHVNHFSYNWGLNYHFSLF 68

  Fly    70 FVLVNLLGQLGGCGMVMARFKVDIAVGLLFFIVVLQTVAYSILWDFQFLLRNFALIGALLLVLAE 134
            ..:|.::..|.|...||.|:||..:..:|.|.:..|.:.|.:...:..|.||.:::.|::|::||
 Worm    69 LTIVMIINLLFGSLFVMMRYKVTESSAVLGFTIFAQVILYQLYTTYHLLTRNISIVAAIMLLVAE 133

  Fly   135 ARIEGRSLFAGVPSMGENKPKNFMQL---------------AGRILLAFMFITLIRFELSVWQVI 184
            ..:.            :.||.|:.||               |.|:.|..|.|:::.|::|..:::
 Worm   134 NMLR------------KPKPANYTQLPRDEHEIEVTSVLLAACRVCLNLMLISMVHFDMSYTRIL 186

  Fly   185 QDIIGSILMVLVVLGYKTKLSALILVALLTILNLYHNAWWTIPSYKPLRD----FLKYDFFQTLS 245
            ..||...:|:.|.||:||::.:.:|...|...|:..|.:|.       :|    .::||||||||
 Worm   187 LCIISYGMMIFVWLGFKTRMMSFMLATWLFAYNIVLNDFWN-------KDAELHIIRYDFFQTLS 244

  Fly   246 VIGGLLMIVSLGPGGVSMDEHKKKW 270
            .|||||:::..|||..|.||.||||
 Worm   245 AIGGLLLLIHTGPGEFSFDELKKKW 269

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Surf4NP_477222.1 SURF4 5..270 CDD:111019 88/283 (31%)
T02E1.7NP_492235.1 SURF4 4..269 CDD:111019 88/283 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2259
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG51950
OrthoDB 1 1.010 - - D1272733at2759
OrthoFinder 1 1.000 - - FOG0003735
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23427
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2591
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
87.890

Return to query results.
Submit another query.