DRSC/TRiP Functional Genomics Resources

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Protein Alignment SerRS-m and SRS

DIOPT Version :9

Sequence 1:NP_001262599.1 Gene:SerRS-m / 41862 FlyBaseID:FBgn0021750 Length:417 Species:Drosophila melanogaster
Sequence 2:NP_849647.1 Gene:SRS / 837734 AraportID:AT1G11870 Length:514 Species:Arabidopsis thaliana


Alignment Length:403 Identity:166/403 - (41%)
Similarity:231/403 - (57%) Gaps:35/403 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 LRRQRSHDAKAVEAPIHRPVPTSAQLDELERNVVVRHHKNNVPLIRSLI--QELDAGDQHKLR-Q 77
            ||.:|::.||.::          .:|:..||..:|...||   |..||:  :|    |..||: :
plant   124 LREERNNVAKKMK----------GKLEPSERERLVEEGKN---LKESLVTLEE----DLVKLKDE 171

  Fly    78 LQAELEQLPNATHPRLRDYGEEPRELAQYVHRQLTPQSRLKEFSELARALNLYRMDHLGNYTGHK 142
            ||...:.:||.|||.:...||:...:.|.|.........:|:..:|.:.|:|...|.....:|.|
plant   172 LQHVAQSIPNMTHPDVPVGGEDSSAIRQEVGSPREFSFPIKDHLQLGKDLDLIDFDSAAEVSGSK 236

  Fly   143 SYYLTGQLATLEQAIIQYALQAVTEHGFKLISVPDILPKEVIESCGMRTEGERTQVYKLD-TGEC 206
            .:||..:...||.|::.:.|..|.:.|:..::.|:|:...::|.||.:..|:.||||.:| |.:|
plant   237 FFYLKNEAVLLEMALLNWTLSQVMKKGYTPLTTPEIVRSSIVEKCGFQPRGDNTQVYSIDGTDQC 301

  Fly   207 LSGTSEMALAGFFANKLLSEDQLPLKVTAVSRCYRAETSGL-QEEKGIYRVHQFNKVEMFAICTE 270
            |.||:|:.:.|...:.:|.|..||||..|.|.|:|.|.... ...||:||||||:|.|||.||..
plant   302 LIGTAEIPVGGIHMDSILLESALPLKYIAFSHCFRTEAGAAGAATKGLYRVHQFSKAEMFVICQP 366

  Fly   271 EQSEAELEEFKNIEVDLFRRLGLNFRLLDMPPCELGAPAYQKYDIEAWMPGRQMWGEISSCSNCT 335
            |.||:..:|...||.|||..|||:|:.|||...:||||||:|:||||||||...:|||||.||||
plant   367 EDSESFHQELIQIEEDLFTSLGLHFKTLDMATADLGAPAYRKFDIEAWMPGLGRFGEISSASNCT 431

  Fly   336 DYQARRLGIRYRRSADGQ------------ILHAHTINGTATAIPRLLIALLESYQKEDG-IEIP 387
            |||:||||||||.|...|            ....||:|.||.|:||:::.|||:||:||| :.||
plant   432 DYQSRRLGIRYRPSEPPQTGPKKGKANLPATKFVHTLNATACAVPRMMVCLLENYQQEDGSVVIP 496

  Fly   388 AVLRPFMDNQELI 400
            ..|||||...|||
plant   497 EPLRPFMGGIELI 509

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SerRS-mNP_001262599.1 SerS 60..404 CDD:223250 154/359 (43%)
class_II_aaRS-like_core 100..394 CDD:294192 134/308 (44%)
SRSNP_849647.1 PLN02320 17..514 CDD:177954 166/403 (41%)
Seryl_tRNA_N 79..182 CDD:280549 21/74 (28%)
SerRS_core 197..503 CDD:238393 134/305 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 185 1.000 Domainoid score I1007
eggNOG 1 0.900 - - E1_COG0172
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H6073
Inparanoid 1 1.050 280 1.000 Inparanoid score I875
OMA 1 1.010 - - QHG54742
OrthoDB 1 1.010 - - D726296at2759
OrthoFinder 1 1.000 - - FOG0005193
OrthoInspector 1 1.000 - - oto3234
orthoMCL 1 0.900 - - OOG6_100275
Panther 1 1.100 - - LDO PTHR11778
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X3706
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.840

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