DRSC/TRiP Functional Genomics Resources

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Protein Alignment SerRS-m and sars1

DIOPT Version :9

Sequence 1:NP_001262599.1 Gene:SerRS-m / 41862 FlyBaseID:FBgn0021750 Length:417 Species:Drosophila melanogaster
Sequence 2:NP_998852.1 Gene:sars1 / 407933 XenbaseID:XB-GENE-969040 Length:511 Species:Xenopus tropicalis


Alignment Length:415 Identity:128/415 - (30%)
Similarity:207/415 - (49%) Gaps:43/415 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 VPTSAQLDELERNVVVRHHKNNVPLIRSLIQELDAGDQHKLRQLQAE----LEQLPNATHPRLRD 95
            :|.:.|||:|...|:.......:..:|.||.|..|....:..:|:||    |.::.|..||.:..
 Frog    80 LPENIQLDQLTAEVLSALSVTQIKRLRVLIDEAIAATDTERIKLEAERFESLREIGNLLHPTVPI 144

  Fly    96 YGEEPRELAQYVHRQLTPQSRLKEFS--ELARALNLYRMDHLGNYTGHKSYYLTGQLATLEQAII 158
            ..:|..:  ..|.|........|.:|  :|...::.:..:......|.:.|:|.|.|..||||:|
 Frog   145 SNDEDND--NKVERTWGDCEVRKRYSHVDLVVMVDGFEGEKGAVVAGSRGYFLKGPLVFLEQALI 207

  Fly   159 QYALQAVTEHGFKLISVPDILPKEVIESCGMRTEGERTQVYKL---------DTG---ECLSGTS 211
            |:||..:.|..:..|..|..:.|||::.....::.:. ::||:         |..   :.|..||
 Frog   208 QFALHTLAEKQYTPIYTPFFMRKEVMQEVAQLSQFDE-ELYKVIGKGSEKSDDNSIDEKYLIATS 271

  Fly   212 EMALAGFFANKLLSEDQLPLKVTAVSRCYRAET-SGLQEEKGIYRVHQFNKVEMFAICTEEQSEA 275
            |..:|....::.|..::|||:...:|.|:|.|. |..::.:||:|||||.|:|.|...:...:::
 Frog   272 EQPIAALHRDEWLKPEELPLRYAGISTCFRQEVGSHGRDTRGIFRVHQFEKIEQFIYASPNDNKS 336

  Fly   276 -EL-EEFKNIEVDLFRRLGLNFRLLDMPPCELGAPAYQKYDIEAWMPGRQMWGEISSCSNCTDYQ 338
             || ||........:::||:.:|::::....|...|.:|.|:|||.||...:.|:.|||||||||
 Frog   337 WELFEEMIMTAESFYQKLGIPYRIVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQ 401

  Fly   339 ARRLGIRY---RRSADGQILHAHTINGTATAIPRLLIALLESYQKEDGIEIPAVLRPFMD----- 395
            ||||.|||   ::..| ::...|.:|.|..|..|.:.|:||:||.|:||.||..||.||.     
 Frog   402 ARRLRIRYGQTKKMMD-KVEFVHMLNATMCATTRAICAILENYQTEEGIIIPEKLRDFMPPGLNY 465

  Fly   396 ----------NQELITRNKRIPETK 410
                      :|||..:.|:..:.|
 Frog   466 IIKFVKPAPIDQELTKKQKKQQQEK 490

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SerRS-mNP_001262599.1 SerS 60..404 CDD:223250 120/382 (31%)
class_II_aaRS-like_core 100..394 CDD:294192 102/313 (33%)
sars1NP_998852.1 PLN02678 3..474 CDD:215364 123/397 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D495094at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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