DRSC/TRiP Functional Genomics Resources

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Protein Alignment SerRS-m and sars2

DIOPT Version :9

Sequence 1:NP_001262599.1 Gene:SerRS-m / 41862 FlyBaseID:FBgn0021750 Length:417 Species:Drosophila melanogaster
Sequence 2:XP_002940400.1 Gene:sars2 / 100485850 XenbaseID:XB-GENE-969286 Length:505 Species:Xenopus tropicalis


Alignment Length:417 Identity:166/417 - (39%)
Similarity:242/417 - (58%) Gaps:49/417 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 LRRQRSHDAKAVEAPIHRPVPTSAQ-LDELERNVVVRHHKNNVPL-IRSLIQELDAGDQHKLRQL 78
            |..::|..||.|:   |..:....| |....|..::|....::.| :.:|.:|            
 Frog    97 LEEEKSAIAKEVK---HMVISEEKQNLQTNPRYALIRKRGKDIRLELSTLYKE------------ 146

  Fly    79 QAELE--------QLPNATHPRLRDYGEEPRELAQYVHRQLTPQSRLKEFS-------ELARALN 128
            ::.||        :|||.|||. ...|:|.:.      |.|.......||.       |:...|:
 Frog   147 ESNLEGSFYPRALRLPNRTHPN-TPVGDESKA------RVLEVVGVKPEFDFKICGHLEIGEDLD 204

  Fly   129 LYRMDHLGNYTGHKSYYLTGQLATLEQAIIQYALQAVTEHGFKLISVPDILPKEVIESCGMRTEG 193
            :.|...|.:.:||:||||.|..:.|:.|::.:.:..:.:.||..:||||:|...|.|.|||:.:.
 Frog   205 IIRQRRLSHVSGHRSYYLRGAGSLLQHALVNFTISKLVKKGFIPMSVPDMLRGAVFEGCGMQADA 269

  Fly   194 ERTQVYKLDTGE----CLSGTSEMALAGFFANKLLSEDQLPLKVTAVSRCYRAETSGLQEEKGIY 254
            ..:|||.:|..:    .|:||||:.:||||.:..:....||::....|.||||||...:|..|:|
 Frog   270 HASQVYSVDPLQHPDLNLAGTSEVGIAGFFMDHAVMLQDLPVRTVCCSTCYRAETDTGRETWGLY 334

  Fly   255 RVHQFNKVEMFAICTEE---QSEAELEEFKNIEVDLFRRLGLNFRLLDMPPCELGAPAYQKYDIE 316
            |||.|.|||||.:...|   :|:..|:||..::.::|..|||:|::|:||..|||.|||:|||||
 Frog   335 RVHHFTKVEMFGVTANESGIESQEMLDEFLGLQKEIFSELGLHFKVLEMPTQELGLPAYRKYDIE 399

  Fly   317 AWMPGRQMWGEISSCSNCTDYQARRLGIRYRRSADGQILHAHTINGTATAIPRLLIALLESYQKE 381
            ||||||..:|||||.|||||||:|||.|.|:|. ||::.||||:||||.|:||||||:|||.|::
 Frog   400 AWMPGRGKYGEISSTSNCTDYQSRRLNIMYQRQ-DGELRHAHTVNGTACAVPRLLIAILESNQRK 463

  Fly   382 DG-IEIPAVLRPFMDNQELITRNKRIP 407
            || :.||.||:|:| ..::|.:.:.||
 Frog   464 DGAVLIPEVLQPYM-GTDVIEKPRYIP 489

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SerRS-mNP_001262599.1 SerS 60..404 CDD:223250 153/366 (42%)
class_II_aaRS-like_core 100..394 CDD:294192 139/308 (45%)
sars2XP_002940400.1 SbcC <44..>151 CDD:223496 13/68 (19%)
SerRS_core 177..477 CDD:238393 139/306 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 201 1.000 Domainoid score I2960
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H6073
Inparanoid 1 1.050 278 1.000 Inparanoid score I2861
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D495094at33208
OrthoFinder 1 1.000 - - FOG0005193
OrthoInspector 1 1.000 - - oto102340
Panther 1 1.100 - - LDO PTHR11778
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1456
SonicParanoid 1 1.000 - - X3706
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
99.190

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