DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tm2 and tpm1

DIOPT Version :9

Sequence 1:NP_001262592.1 Gene:Tm2 / 41853 FlyBaseID:FBgn0004117 Length:284 Species:Drosophila melanogaster
Sequence 2:NP_001280097.1 Gene:tpm1 / 393908 ZFINID:ZDB-GENE-040426-854 Length:284 Species:Danio rerio


Alignment Length:281 Identity:135/281 - (48%)
Similarity:195/281 - (69%) Gaps:0/281 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDAIKKKMQAMKLEKDNAIDKADTCENQAKDANSRADKLNEEVRDLEKKFVQVEIDLVTAKEQLE 65
            |||||||||.:||:|:||:|:|:..|...|.|..|:.:|.:::..|:||....|.:|....|.|:
Zfish     1 MDAIKKKMQMLKLDKENALDRAEQAEGDKKAAEDRSKQLEDDLLALQKKLKGTEDELDKYSEALK 65

  Fly    66 KANTELEEKEKLLTATESEVATQNRKVQQIEEDLEKSEERSTTAQQKLLEATQSADENNRMCKVL 130
            .|..:||..||..|..|.:||:.||::|.:||:|::::||..||.|||.||.::|||:.|..||:
Zfish    66 DAQEKLELAEKKATDAEGDVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVI 130

  Fly   131 ENRSQQDEERMDQLTNQLKEARMLAEDADTKSDEVSRKLAFVEDELEVAEDRVRSGESKIMELEE 195
            |||:.:|||:|:....|||||:.:||:||.|.:||:|||..||.|||..|:|....|||..||||
Zfish   131 ENRALKDEEKMEIQEIQLKEAKHIAEEADRKYEEVARKLVIVEGELERTEERAELNESKCSELEE 195

  Fly   196 ELKVVGNSLKSLEVSEEKANQRVEEFKREMKTLSIKLKEAEQRAEHAEKQVKRLQKEVDRLEDEL 260
            |||.|.|:|||||...||.:|:.::::.|:|.|:.||||||.|||.||:.|.:|:|.:|.|||||
Zfish   196 ELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLTDKLKEAETRAEFAERSVAKLEKTIDDLEDEL 260

  Fly   261 GINKDRYKSLADEMDSTFAEL 281
            ...|.:||::::|:|....::
Zfish   261 YSQKLKYKAISEELDHALNDM 281

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tm2NP_001262592.1 Tropomyosin 48..281 CDD:395200 113/232 (49%)
tpm1NP_001280097.1 Tropomyosin 48..282 CDD:278679 113/234 (48%)
TMPIT 180..>274 CDD:285135 48/93 (52%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170581557
Domainoid 1 1.000 245 1.000 Domainoid score I2136
eggNOG 1 0.900 - - E1_KOG1003
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG48449
OrthoDB 1 1.010 - - D1576041at2759
OrthoFinder 1 1.000 - - FOG0002679
OrthoInspector 1 1.000 - - mtm6508
orthoMCL 1 0.900 - - OOG6_101961
Panther 1 1.100 - - O PTHR19269
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X463
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1312.720

Return to query results.
Submit another query.