DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tm1 and tpm2

DIOPT Version :9

Sequence 1:NP_732006.2 Gene:Tm1 / 41852 FlyBaseID:FBgn0003721 Length:711 Species:Drosophila melanogaster
Sequence 2:NP_001002119.1 Gene:tpm2 / 415209 ZFINID:ZDB-GENE-040625-114 Length:284 Species:Danio rerio


Alignment Length:336 Identity:138/336 - (41%)
Similarity:205/336 - (61%) Gaps:60/336 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   372 KKKKREKGERSEKSDKSEKSDRKKKSSGKKERSKRSNPMEQSSDSLATDLSAGAIDEGIALADDD 436
            ||.:..|.::....|::|:::..||  |.:::.|:   :|:...:|...|      :|:   :|:
Zfish     6 KKMQMLKLDKENAIDRAEQAEIDKK--GAEDKCKQ---LEEELLALQKKL------KGV---EDE 56

  Fly   437 DNQAAEWSKLRCTSEAAEIVAEREARRNKGRCADYPGLAFGRSIFSSDTMMKFNIIRNELHNIMN 501
            .::.:|  .|:...|..| .||::|       ||                               
Zfish    57 LDKYSE--SLKDAQEKLE-QAEKKA-------AD------------------------------- 80

  Fly   502 TQLKRAESEVAALNRRIQLLEEDLERSEERLGSATAKLSEASQAADESERARKILENRALADEER 566
                 ||:|||:|||||||:||:|:|::|||.:|..||.||.:|||||||..|::||||..|||:
Zfish    81 -----AEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIENRATKDEEK 140

  Fly   567 MDALENQLKEARFLAEEADKKYDEVARKLAMVEADLERAEERAEQGENKIVELEEELRVVGNNLK 631
            |:..|.|||||:.:|||||:||:||||||.::|.:|||:|||||..|.|..:|||||:.|.||||
Zfish   141 MEIQEMQLKEAKHIAEEADRKYEEVARKLVILEGELERSEERAEVAEAKSGDLEEELKNVTNNLK 205

  Fly   632 SLEVSEEKANQREEEYKNQIKTLNTRLKEAEARAEFAERSVQKLQKEVDRLEDDLVLEKERYKDI 696
            |||...||.:.:|::|:.:|:.|..:|||||.|||||||||.||:|.:|.|||::..:|.:.|.:
Zfish   206 SLEAQAEKYSTKEDKYEEEIRVLTDKLKEAETRAEFAERSVAKLEKTIDDLEDEVYAQKLKGKAL 270

  Fly   697 GDDLDTAFVEL 707
            .::||.|..::
Zfish   271 SEELDLALNDM 281

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tm1NP_732006.2 Tropomyosin_1 7..>85 CDD:289488
Tropomyosin_1 517..648 CDD:289488 78/130 (60%)
tpm2NP_001002119.1 Tropomyosin 48..282 CDD:395200 127/289 (44%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170581558
Domainoid 1 1.000 245 1.000 Domainoid score I2136
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H121635
Inparanoid 1 1.050 297 1.000 Inparanoid score I2703
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1576041at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm6508
orthoMCL 1 0.900 - - OOG6_101961
Panther 1 1.100 - - O PTHR19269
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X463
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1110.900

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