DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cp190 and hic2

DIOPT Version :10

Sequence 1:NP_524359.2 Gene:Cp190 / 41848 FlyBaseID:FBgn0000283 Length:1096 Species:Drosophila melanogaster
Sequence 2:NP_878289.2 Gene:hic2 / 359828 ZFINID:ZDB-GENE-030619-1 Length:560 Species:Danio rerio


Alignment Length:627 Identity:128/627 - (20%)
Similarity:215/627 - (34%) Gaps:217/627 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 CDLTLQFRDNSQLKVHRLVLSACTDYFNVLEQTCEIVDDALIMPNEFQADVVVP-----IVNFMY 89
            ||:.:.. :|:..:.|:.:|:|.:.||..|     |:.|.||   ....|:|.|     :::|:|
Zfish    24 CDVIIVV-ENALFRAHKNILAASSIYFKSL-----ILHDNLI---NLDTDMVNPSVFRQVLDFIY 79

  Fly    90 TGTL----EFELKMYGKLLRTAKEMNM----TVLLKLLEAHRRTMENVNRQQRPPSPKGIRRRTV 146
            ||.|    :|....:..||..|..:.:    .:..|.|:.:.|::.|     :|.:|      |.
Zfish    80 TGKLLSSDQFSDHNFNALLTAASYLQLHDLAALCRKKLKRNGRSLLN-----KPTTP------TN 133

  Fly   147 GQPSSGLPQQRVLGPSPQSRNVATPIAQRANTQRG--------------------STGNTM--SR 189
            |:.|.   .|| |..:|.:.|..:.:.....|:|.                    :|.|::  |.
Zfish   134 GRTSR---NQR-LSSTPVTPNQMSGLKDSEKTKRHEELIKDDLSEDEMFARNTHCTTSNSLSPST 194

  Fly   190 TSGGSN--------------RSPYGDSSNVKQEPTS-PFEQLRKGYNNNKRPAQTSLLSPPSKKP 239
            :..|||              :||.|.::..:..|:| |.|                  ||.|...
Zfish   195 SKNGSNGSCGMQELGLDLSKKSPSGSTATEEVSPSSIPQE------------------SPQSASE 241

  Fly   240 SLEEVKEFAEQQRMRKQIAAEYGDNDPEYDGGMLYDDVHAGDDDDDDMPP---QPSTSKQQSPQG 301
            |......|.|....:...|.|     |.        ::..|:.::...||   |..:|:|.:.|.
Zfish   242 STANSASFDENPNTQNLTAGE-----PM--------ELGVGECEESQPPPDVDQHKSSRQVTRQR 293

  Fly   302 TQTQLEHGSTTIILKQDSPSQTPTIIVKDSSNAKLNHTKIIAEVLRQYPHIVKGHKNIKLKIMPN 366
            .|.:.|.       |:....:..|:     .|......|:..|.|                    
Zfish   294 RQPKSEG-------KKGEDMERVTL-----PNGVSKRLKVAGERL-------------------- 326

  Fly   367 TPAAPTEKSAPATVKPPANQSSATTSPHKKLHVSFKA-DKSTPLITAQQKAASSQQKSGTSQTTG 430
             ||.....|                      .|||:. |:...|...|:::    ::||.|:..|
Zfish   327 -PAGGNGNS----------------------EVSFQCKDEEEGLENGQEQS----EESGQSENEG 364

  Fly   431 NQGTGANPPANTAAAQKRRIDSKTMHALIAQGAENTTGP--WLCLRCGVNGRPISIPSYRGFRRH 493
            .:.:     ||....|              :|.|...|.  ::|:.||.     ..||......|
Zfish   365 GRNS-----ANYVYRQ--------------EGFEPALGDNLYVCIPCGK-----GFPSSEELNAH 405

  Fly   494 LINTHKETIDPALCEHCGWRSVNN-----------RELHFHMYMEHQTKSLLYTFAECALCNQSY 547
             :.||.|       |....:..:|           .:|...:...|.|::..::   |::||:||
Zfish   406 -VETHTE-------EELYIKEEDNDSYPKEDEVEAEDLSSQITQVHGTETRRFS---CSVCNKSY 459

  Fly   548 RTKGELEAHINEVHTDDNKQQCIYCNKVFEQELQLYRHMKSY 589
            :....|..| .:.|.......|..|.|:|.|...:.|||:|:
Zfish   460 KDPATLRQH-EKTHWLTRPFPCNICGKMFTQRGTMTRHMRSH 500

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cp190NP_524359.2 BTB_POZ_CP190-like 16..125 CDD:349620 27/107 (25%)
COG5236 <471..>594 CDD:227561 31/130 (24%)
C2H2 Zn finger 540..568 CDD:275371 8/27 (30%)
C2H2 Zn finger 569..586 CDD:275371 6/16 (38%)
PTZ00121 <709..1075 CDD:173412
hic2NP_878289.2 BTB_POZ_ZBTB30_HIC2 3..122 CDD:349643 27/106 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 122..163 13/55 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 183..367 50/273 (18%)
C2H2 Zn finger 389..409 CDD:275368 6/25 (24%)
SUF4-like 452..>497 CDD:411020 14/45 (31%)
C2H2 Zn finger 452..472 CDD:411020 7/20 (35%)
C2H2 Zn finger 452..472 CDD:275368 7/20 (35%)
zf-C2H2 478..500 CDD:395048 8/21 (38%)
C2H2 Zn finger 480..500 CDD:275368 8/19 (42%)
C2H2 Zn finger 480..497 CDD:411020 6/16 (38%)
zf-C2H2 506..528 CDD:395048
C2H2 Zn finger 508..528 CDD:275368
zf-H2C2_2 520..545 CDD:463886
C2H2 Zn finger 536..556 CDD:275368
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.