DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cp190 and Dmp1

DIOPT Version :9

Sequence 1:NP_524359.2 Gene:Cp190 / 41848 FlyBaseID:FBgn0000283 Length:1096 Species:Drosophila melanogaster
Sequence 2:XP_006250684.1 Gene:Dmp1 / 25312 RGDID:2508 Length:504 Species:Rattus norvegicus


Alignment Length:553 Identity:107/553 - (19%)
Similarity:207/553 - (37%) Gaps:110/553 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   546 SYRTKGELEAHINEVHTDDNKQQCIYCNKVFEQELQLYRHMKSYHKEQALEDGIIDETDEEFLGS 610
            |..:|...|...|..|||.::.     .:....:...||......|...::..  .|.||:..|.
  Rat    50 SEESKVSPEGQANSDHTDSSES-----GEELGSDRSQYRPAGGLSKSAGMDAD--KEEDEDDSGD 107

  Fly   611 QDEEEEAEGDEEQEPEQTGKVRILSDISLPATSAITVQQAQQEQLQEEDVEQVQQEVKFVGADGN 675
            ....:|..|...:|.:..|..|:.||    ..||.|.|.::....||...:....:.|    |.:
  Rat   108 DTFGDEDNGPGPEERQWGGPSRLDSD----EDSADTTQSSEDSTSQENSAQDTPSDSK----DHH 164

  Fly   676 EVELTDEQRKEILSQLNQQQAGATAGGVVMVLSEPEAEHVKQETDEKSLAGTEEEYDDSQIYSEL 740
            ..|..........:|.::.:.....||     ||.|:.|           |...|:||..:.|  
  Rat   165 SDEADSRPEAGDSTQDSESEEYRVGGG-----SEGESSH-----------GDGSEFDDEGMQS-- 211

  Fly   741 GAADSVESAKKNIADESKESIDNLEWAENLIAESEEQSNKEPKSDKPRDDISEKLKELTGDWTED 805
               |...|.:.:.......|..        |...|.:.:.||.|                  |:|
  Rat   212 ---DDPGSTRSDRGHTRMSSAG--------IRSEESKGDHEPTS------------------TQD 247

  Fly   806 ENDDDVDDKPATAELASELANKDPEPTVHEEEDDIDLALQSLHKGPEEATEE-KASEESVTSADD 869
             :||..|     .|.:|..:.:  ...|.||:|..:||..:..:...::||: ::.|||.:...:
  Rat   248 -SDDSQD-----VEFSSRKSFR--RSRVSEEDDRGELADSNSRETQSDSTEDFRSKEESRSETQE 304

  Fly   870 AVDAVPNINSQPEKMDVDSEAADEKASKAEVQIKKEAELENDQEEFIKEDSPIPHSDSVAELREA 934
            ......:....||..|..||:::|....::       |..::.:|.:..:|...:.|:.::..:.
  Rat   305 DTAETQSQEDSPEGQDPSSESSEEAGEPSQ-------ESSSESQEGVASESRGDNPDNTSQTGDQ 362

  Fly   935 VTASEGEDDVHLEADNIRKELLDELIAEAEKPDQEKDIVQSEENATTEALDRSVTDEDDLVPPTQ 999
            ..:...|:|          .|.....:|::..:::.|...:|..:.:|....|..|||       
  Rat   363 RDSESSEED----------RLNTFSSSESQSTEEQGDSESNESLSLSEESQESAQDED------- 410

  Fly  1000 VSTEQMEIDEPAAEKAAENNEDTRTADEKEAVEDKPNQTQDVTTAEKPTLESAKAGDEATSGE-- 1062
             |:.|..:...:|.:.:.:.| :::..:..:.|::.:.:||.:.:::   ||...|..::|.|  
  Rat   411 -SSSQEGLQSQSASRESRSQE-SQSEQDSRSEENRDSDSQDSSRSKE---ESNSTGSTSSSEEDN 470

  Fly  1063 ---AASVDKVKSLISEW-----GDDDEDEDENG 1087
               ....|..|.::..:     ||.|:::.::|
  Rat   471 HPKNIEADNRKLIVDAYHNKPIGDQDDNDCQDG 503

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cp190NP_524359.2 BTB 20..122 CDD:279045
BTB 31..127 CDD:197585
C2H2 Zn finger 540..568 CDD:275371 7/21 (33%)
C2H2 Zn finger 569..586 CDD:275371 2/16 (13%)
Dmp1XP_006250684.1 DMP1 1..504 CDD:284637 107/553 (19%)
PHA02664 <112..195 CDD:177447 21/95 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1181
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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