DRSC/TRiP Functional Genomics Resources

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Protein Alignment Amt and AMT1;5

DIOPT Version :9

Sequence 1:NP_001097800.1 Gene:Amt / 41841 FlyBaseID:FBgn0038309 Length:562 Species:Drosophila melanogaster
Sequence 2:NP_189072.1 Gene:AMT1;5 / 822017 AraportID:AT3G24290 Length:496 Species:Arabidopsis thaliana


Alignment Length:461 Identity:158/461 - (34%)
Similarity:238/461 - (51%) Gaps:60/461 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 GTVGAPRN---HSNYVIPGLYDLSVEDTNWVLTSSFIIFTMQTGFGMLESGCVSIKNEVNIMMKN 65
            |.:|:..|   .:.|.|         |..::|.|::::|.||.||.||.:|.|..||.:|||:.|
plant    29 GQLGSVNNKFTDAAYAI---------DNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTN 84

  Fly    66 VIDIVLGGFTYWLFGYGMSFGRGPLSNPFIAIGDF-LLDPPVGDALMGQIFAAFLFQLSFATTAT 129
            |:|...||..|:||||..:||..  |:.||...:| |.:.|.    :...::.||:|.:||..|.
plant    85 VLDAAAGGLFYYLFGYAFAFGES--SDGFIGRHNFGLQNFPT----LTSDYSFFLYQWAFAIAAA 143

  Fly   130 TIVSGAMAERCNFKAYCLF-SFLNTAVYCIPAGWVWGEHGFLNKL---------GAVDIAGSGPV 184
            .|.||::|||..|.||.:: |||...||.:.:.|.|...|:.:..         ||:|.||||.|
plant   144 GITSGSIAERTKFVAYLIYSSFLTGFVYPVVSHWFWSPDGWASPFRSEDRLFGTGAIDFAGSGVV 208

  Fly   185 HLIGGASAFASAAMLGPRLGRYSEGYDPLPL-GNPVN-ACMGLFVLWWGWLAF------------ 235
            |::||.:....|.:.|||:||:.:|...:.| |:..: ..:|.|:||:||..|            
plant   209 HMVGGIAGLWGALIEGPRIGRFPDGGHAIALRGHSASLVVLGTFLLWFGWYGFNPGSFTKILIPY 273

  Fly   236 NSGSTYGVSGAKWQYAARAAVMTMMGSFGGGFTSSIYSFWRH---GGGMDIMDLINGVLGSLVSI 297
            ||||.||    :|....|.||.|.:    .|.|:::.:.:..   .|..::.|:.||:||...:|
plant   274 NSGSNYG----QWSGIGRTAVTTTL----SGCTAALTTLFGKRLLSGHWNVTDVCNGLLGGFAAI 330

  Fly   298 TAGCFLYRAWEALVIGAIGSLFCVLAMPLFDRMGVDDPVGASAVHGVCGIWGVIAVGLFADNPIP 362
            ||||.:...|.|:|.|.:.||..:....|.:.:..|||:.|:.:||.||.||:|.|||||.... 
plant   331 TAGCSVVDPWAAIVCGFVASLVLIGCNKLAELLKYDDPLEAAQLHGGCGAWGLIFVGLFAKEKY- 394

  Fly   363 LDTTNGRS-----GLFKGGGWYLLGIQTLSALCLACWGVCSTFLLLYVINKIIPIRMDPHEELLG 422
            ::...|.|     |||.|||..|||.|.:..:.:..|...:...|.:::.|:..:|:....|:.|
plant   395 INEVYGASPGRHYGLFMGGGGKLLGAQLVQIIVIVGWVSATMGTLFFILKKLNLLRISEQHEMRG 459

  Fly   423 ADLTEH 428
            .||..|
plant   460 MDLAGH 465

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AmtNP_001097800.1 Ammonium_transp 30..428 CDD:275788 151/430 (35%)
AMT1;5NP_189072.1 amt 47..470 CDD:273292 152/434 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 248 1.000 Domainoid score I531
eggNOG 1 0.900 - - E1_COG0004
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 250 1.000 Inparanoid score I1032
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D910733at2759
OrthoFinder 1 1.000 - - FOG0001736
OrthoInspector 1 1.000 - - otm2514
orthoMCL 1 0.900 - - OOG6_100186
Panther 1 1.100 - - O PTHR11730
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X200
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1110.830

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