DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Amt and rhbg

DIOPT Version :9

Sequence 1:NP_001097800.1 Gene:Amt / 41841 FlyBaseID:FBgn0038309 Length:562 Species:Drosophila melanogaster
Sequence 2:NP_956365.2 Gene:rhbg / 337596 ZFINID:ZDB-GENE-030131-9542 Length:459 Species:Danio rerio


Alignment Length:475 Identity:102/475 - (21%)
Similarity:169/475 - (35%) Gaps:119/475 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 NNGTVGAPRNHSNYVIPGLYDLSVEDTNWVLTSSFIIFTMQTGFGMLES-----GCVSIKNEVNI 61
            ||.|..| .|...|..|...|:.|           :||   .|||.|.:     |..|:.     
Zfish    44 NNSTDPA-TNEFYYRYPSFQDVHV-----------MIF---VGFGFLMTFLQRYGFSSMG----- 88

  Fly    62 MMKNVIDIVLGGFT-YWL-----FGYGMSFGRGPLSNPFIAIGDFLLDPPVGDALMGQIFAAFLF 120
                 .:.::..|: .|.     |.:||..|:       |.:|                 ...:.
Zfish    89 -----FNFLIAAFSLQWATLMQGFFHGMHHGK-------IHVG-----------------VTSMI 124

  Fly   121 QLSFATTATTIVSGAMAERCNFKAYCLFSFLNTAVYCIPAGWVWGEHGFLNKLGAVDIAGSGPVH 185
            ...|.|.|..|..||:..:.:.....:.:.|...::.:      .|:..|:.|||.|..||..:|
Zfish   125 NADFCTGAVLISFGAVLGKTSPVQLLVMAILEVTLFAV------NEYILLSILGANDAGGSMTIH 183

  Fly   186 LIGGASAFASAAML-GPRLGRYSEGYDPLPLGNPVNACMGLFVLWWGWLAFNSGST-YG----VS 244
            ..|.........:| .|.|.: |:..:.....:.:.|.:|...||..|.:|||..| ||    .:
Zfish   184 TFGAYFGLMVTRILHRPNLDK-SKHKNSSVYHSDLFAMIGTIFLWMFWPSFNSAITQYGDPQHRT 247

  Fly   245 GAKWQYAARAAVMTMMGSFGGGFTSSIYSFWRHGGGMDIMDLINGVLGSLVSI-TAGCFLYRAWE 308
            .|...|:..|..:...     ||:|.:    ...|.:|::.:.|..|...|:: |||..:...:.
Zfish   248 AANTYYSLAACTLATF-----GFSSLV----NPEGKLDMVHIQNAALAGGVAVGTAGEMMLTPFG 303

  Fly   309 ALVIGAIGSLFCVLA----MPLFD-RMGVDDPVGASAVHGVCGIWGVIAVGLFADNPIPLDT-TN 367
            ::::|.:.....||.    .|..: ::.:.|..|...:||:.||.|.| ||.........|. .|
Zfish   304 SMIVGFLAGTISVLGYKYLTPFMESKLKIQDTCGIHNLHGMPGILGAI-VGAVTAALASRDVYGN 367

  Fly   368 GRSGLF------------KGGGWYLLGIQTLSALCLACWGVCSTFLLLYVINKIIPIRMDPHE-- 418
            |...:|            ..||:..:.:.....:.| ..|:.:.|||.      :||...|.:  
Zfish   368 GLDKVFLEAADNSQWSAQTKGGFQAISLAVTLGIAL-IGGLITGFLLK------LPIYGTPPDTQ 425

  Fly   419 --------ELLGADLTEHRI 430
                    |:.|.:...|.:
Zfish   426 CFEDAVYWEVPGEEEDHHEL 445

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AmtNP_001097800.1 Ammonium_transp 30..428 CDD:275788 92/443 (21%)
rhbgNP_956365.2 Ammonium_transp 50..415 CDD:275788 93/437 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 440..459 1/6 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D910733at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X200
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.920

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