DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Amt and Rhd

DIOPT Version :9

Sequence 1:NP_001097800.1 Gene:Amt / 41841 FlyBaseID:FBgn0038309 Length:562 Species:Drosophila melanogaster
Sequence 2:NP_035400.3 Gene:Rhd / 19746 MGIID:1202882 Length:418 Species:Mus musculus


Alignment Length:407 Identity:81/407 - (19%)
Similarity:131/407 - (32%) Gaps:122/407 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 WVLTSSFIIFTMQTGFGMLESGCVSIKNEV-----------NIMMKNVIDIVLGGFTYWLFGY-G 82
            |.|       .:||.|.:|  .|..|.::.           .::....:...||      ||: .
Mouse    16 WAL-------ELQTAFSLL--FCFFIPHDTAQVDHRFMASYQVLRNLTLMAALG------FGFLS 65

  Fly    83 MSFGRGPLS----NPFIAI----GDFLLDPPVGDALM-GQIFAAFLFQLSFATTATTIVS-GAMA 137
            .||.|...|    |.|:..    |..|||..:|..|. .:|......|::..:|...::| ||:.
Mouse    66 SSFRRHSWSSVAFNLFMLALGVQGTILLDHFLGQVLQWNKINNLSSIQIATMSTLPVLISAGAVL 130

  Fly   138 ERCNF-----------KAYCLFSFLNTAVY------CIPAGWVWGEHGFLNKLGAVDIAGSGPVH 185
            .:.|.           .|:....|.:..|:      .:..|.|:|.:                  
Mouse   131 GKVNLVQLTVMVLMEAMAFGAIRFADEKVFKMTEHIIMMHGHVFGAY------------------ 177

  Fly   186 LIGGASAFASAAMLGPRLGRYSEGYD-PLPLGNPVNACMGLFVLWWGWLAFNSGSTYG------V 243
             .|...|:..:..|..|:|..::... .:...:.:.|.:|...||..|.|.||....|      |
Mouse   178 -FGLTVAWWLSRSLPRRVGENAQTEKVQMATSSSLFAMLGTLFLWIFWPAINSALLEGTKKRNAV 241

  Fly   244 SGAKWQYAARAAVMTMMGSFGGGFTSSIYSFWRHGGGMDIMDLINGVLGSLVSITA-GCFLYRAW 307
            ....:..|..|...|.|.:..           ...|.::::.:.|.||...|::.| ||.:...|
Mouse   242 FNTYYALAVSAVTATSMSALS-----------HPQGKINMVHIHNAVLAGGVAVGAPGCLISSPW 295

  Fly   308 EALVIGAIGSLFCVLAMPLFDRMGVDDPVGASAVHGVCGIWGV----IAVGLFADNPIPLDTTNG 368
            .::|:|.|.                          |:..|||.    ..:.....|...:..|.|
Mouse   296 ISMVLGLIA--------------------------GLISIWGAKCPRACLNHMLQNSSGIHYTFG 334

  Fly   369 RSGLFKGGGWYLLGIQT 385
            ..||.....:|.|.|.|
Mouse   335 LPGLLGALTYYCLQIVT 351

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AmtNP_001097800.1 Ammonium_transp 30..428 CDD:275788 81/407 (20%)
RhdNP_035400.3 Ammonium_transp 53..393 CDD:275788 73/361 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D910733at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X200
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.920

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