DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Amt and amt-4

DIOPT Version :9

Sequence 1:NP_001097800.1 Gene:Amt / 41841 FlyBaseID:FBgn0038309 Length:562 Species:Drosophila melanogaster
Sequence 2:NP_508783.2 Gene:amt-4 / 180728 WormBaseID:WBGene00000136 Length:577 Species:Caenorhabditis elegans


Alignment Length:569 Identity:167/569 - (29%)
Similarity:252/569 - (44%) Gaps:107/569 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 DLSVEDTNWVLTS-SFIIFTMQTGFGMLESGCVSIKNEVNIMMKNVIDIVLGGFTYWLFGYGMSF 85
            |.|..|..:.|.| |.|||.||.||..||:|.|..||..||::||::|..:....||..|:.::|
 Worm    23 DFSENDNAFFLCSMSLIIFLMQCGFAFLEAGAVRSKNTTNILIKNLLDSCIAIVGYWALGWALAF 87

  Fly    86 GRGPLSNP---FIAIGDFLLDPPVGDALMGQIFAAFLFQLSFATTATTIVSGAMAERCNFKAYCL 147
            |..| :|.   |:...:|.|      |.... :..|.||..||.|:.||||||:||||.|..|..
 Worm    88 GDCP-NNTIGLFVGYSEFFL------ANFSN-YPKFFFQYVFAATSATIVSGAVAERCEFANYIT 144

  Fly   148 F-SFLNTAVYCIPAGWVWGEHGFLNKLGAV---------DIAGSGPVHLIGGASAFASAAMLGPR 202
            : |.::|.||.|...|.|...|:: .||..         |.||||.|||.||:.:|.:|.|:|||
 Worm   145 YCSVISTLVYPILTHWGWHPKGWM-ALGITSGVINTHYDDFAGSGVVHLCGGSISFLAAYMIGPR 208

  Fly   203 LGRYSEGYD---PLPLGNPVN-ACMGLFVLWWGWLAFNSGSTYG-VSGAKWQYAARAAVMTMMGS 262
            :||:.|..|   ...||:.|. |.:|.|:|.:|:||||.||... |...:....|.|.|.|::  
 Worm   209 IGRFPEDDDDECDEILGHSVPFAALGGFILMFGFLAFNGGSMADIVKPGEGHIVALAMVNTIL-- 271

  Fly   263 FGGGFTSSIY--SFWRHGGGMDIMDLINGVLGSLVSITAGCFLYRAWEALVIGAIGSLFCVLAMP 325
             .|.|.:..|  :.:.:.|...::..||..|..:|:..|||.....|..:.:|....|..:....
 Worm   272 -SGAFAALTYLIAHYLYHGKWTLLLTINACLAGMVASCAGCNKMEPWACIWVGVGAGLIYLGLSK 335

  Fly   326 LFDRMGVDDPVGASAVHGVCGIWGVIAVGLFADNPIPLDTTNGRSGLFKGG-----GWYLLGIQT 385
            |..|:.:|||:.|.|||...|.||:.:|.....:.:.....|...|...||     .:..||.|.
 Worm   336 LMVRLKIDDPLDAFAVHAGGGFWGLTSVAFIGHDGVVYSIGNTIGGATNGGDQIAQAFAQLGWQW 400

  Fly   386 LSALCLACWGVCSTFLLLYVINKIIPIRMDPHEELLGADLTEH---------------------- 428
            :.||.:..|.:...:.:..::.||..:|:....|:.|.|:.:|                      
 Worm   401 VCALAIVTWSILWMWPIFALLRKIGKLRVSAEVEINGLDIYKHGESAYPLHAYGHGWHDFEAAPD 465

  Fly   429 -RIRHSQ---IGLSRAISALAPIKVDLKDIAGIQPIGINPGHERSIDQLRAAEDKL-------QQ 482
             :|.||:   :|....|.::.|                    |.|::||.:..|:.       |.
 Worm   466 SKINHSKHLPVGRKNRIMSVHP--------------------EMSLEQLASVYDRTGSVGESDQP 510

  Fly   483 WQSYLEQVSGSRANVKMDAGQSHA---DINFKPRTAGNVFNRRIPARKS 528
            .:.::.|....::.: ::|...||   |.|            .:|.||:
 Worm   511 KRLFMNQTERRKSRM-IEANALHALYLDDN------------EVPERKN 546

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AmtNP_001097800.1 Ammonium_transp 30..428 CDD:275788 142/423 (34%)
amt-4NP_508783.2 amt 30..448 CDD:273292 143/429 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0004
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D276521at33208
OrthoFinder 1 1.000 - - FOG0001736
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100186
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R16229
SonicParanoid 1 1.000 - - X200
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
98.710

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