DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Amt and rhr-1

DIOPT Version :9

Sequence 1:NP_001097800.1 Gene:Amt / 41841 FlyBaseID:FBgn0038309 Length:562 Species:Drosophila melanogaster
Sequence 2:NP_001370490.1 Gene:rhr-1 / 178927 WormBaseID:WBGene00004358 Length:463 Species:Caenorhabditis elegans


Alignment Length:372 Identity:88/372 - (23%)
Similarity:144/372 - (38%) Gaps:72/372 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 HSNY--VIPGLYDLSVEDTNWVLTSSFIIFTMQTGFGMLESGCV--SIKN-EVNIMMKNV----- 66
            |.|.  :|.||:.:..          .:||.:   :|..::..:  ..|| |....|.|:     
 Worm     6 HQNQLTLILGLFQVVF----------LVIFAL---YGSYDASALPSETKNVEEAARMTNLYPLFQ 57

  Fly    67 ---IDIVLGGFTYWLFGYGMSF----GRGPLS-NPFIAIGDF---LLDPPVGDALMGQIFAAFLF 120
               :.|.:|      ||:.|:|    |...:| |..:|:...   ::...:..|..|..|...|.
 Worm    58 DTHVMIFIG------FGFLMTFLKRYGFSAVSINMLLAVFTIQWGIIVRGMASAHHGFKFTISLE 116

  Fly   121 QL---SFATTATTIVSGAMAERCNFKAYCLFSFLNTAVYCIPAGWVWGEHGFLNKLGAVDIAGSG 182
            ||   .||.....|..|||..:.:...|.:.:|..|.|..|.      ||..::.|...|:.||.
 Worm   117 QLLTADFAAAVILISMGAMLGKLSPSQYVIMAFFETPVALIV------EHICVHNLQINDVGGSI 175

  Fly   183 PVHLIGGASAFASAAMLGPR--LGRYSEG--YDPLPLGNPVNACMGLFVLWWGWLAFNSGSTYGV 243
            .||..|.....|.|...|.:  .|..:||  |.     ..:.|.:|...||..|.:||: :....
 Worm   176 IVHAFGAYFGLACAKGFGKKEQRGHTNEGSTYH-----TDIFAMIGAIFLWIYWPSFNA-AVAAT 234

  Fly   244 SGAKWQYAARAAVMTMMGSFGGGFTSSIYS--FWRHGGGMDIMDLINGVLGSLVSI-TAGCFLYR 305
            ..|:    .||...|.:.......|:.:.|  ..:| ...|::.:.|..|...|:| |....:..
 Worm   235 DDAR----QRAVANTFLSLCACTMTTFLVSQAVDKH-KRFDMVHIANSTLAGGVAIGTTANVVLE 294

  Fly   306 AWEALVIGAIGSLFCVLAMP-----LFDRMGVDDPVGASAVHGVCGI 347
            .:.|::||.|.....|:...     |.:::|:.|..|.:.:||:.|:
 Worm   295 PYHAMIIGVIAGAVSVIGYKYITPFLSEKLGIHDTCGVNNLHGMPGL 341

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AmtNP_001097800.1 Ammonium_transp 30..428 CDD:275788 83/352 (24%)
rhr-1NP_001370490.1 Ammonium_transp 20..430 CDD:395729 83/358 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D910733at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X200
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.920

Return to query results.
Submit another query.