DRSC/TRiP Functional Genomics Resources

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Protein Alignment Amt and amt-3

DIOPT Version :9

Sequence 1:NP_001097800.1 Gene:Amt / 41841 FlyBaseID:FBgn0038309 Length:562 Species:Drosophila melanogaster
Sequence 2:NP_495761.2 Gene:amt-3 / 174338 WormBaseID:WBGene00000135 Length:687 Species:Caenorhabditis elegans


Alignment Length:544 Identity:207/544 - (38%)
Similarity:299/544 - (54%) Gaps:54/544 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 VIPGLYDLSVEDTNWVLTSSFIIFTMQTGFGMLESGCVSIKNEVNIMMKNVIDIVLGGFTYWLFG 80
            |.|.:..|..:|..|:::||||||||.:|||:||||.||.|:|||||:|||:|:|.||.:||..|
 Worm    27 VTPEVDKLYQDDAVWIISSSFIIFTMHSGFGLLESGSVSAKDEVNIMVKNVVDVVFGGLSYWSCG 91

  Fly    81 YGMSFGRGP-LSNPFIAIGDFLLDPPVGDALM------GQIFAAFLFQLSFATTATTIVSGAMAE 138
            :|.|:|..| ..||::..|.|..||.......      |..:|:||||||.||||:||||||:||
 Worm    92 FGFSYGDIPEWRNPYVGFGKFFYDPTRDYGTRETINQEGWSYASFLFQLSLATTASTIVSGAVAE 156

  Fly   139 RCNFKAYCLFSFLNTAVYCIPAGWVWGEHGFLNKLGAVDIAGSGPVHLIGGASAFASAAMLGPRL 203
            |...|:|.|...:...:..:||.|||.:.|...|.|.||.||...|||:||.....:...|.||.
 Worm   157 RAKLKSYILLGCIVILIQALPAHWVWDKEGVFYKKGVVDFAGCSAVHLVGGIIGLIATVFLKPRR 221

  Fly   204 GRYSEGYDPL-PLGNPVNACMGLFVLWWGWLAFNSGSTYGVSGAKWQYAARAAVMTMMGSFGGGF 267
            .|::|  |.: .:.:|.||.:|.|:|||||...|:||.:|::|.:|:..|||||.|:|.|.|||.
 Worm   222 NRFNE--DSVHQMSSPTNALLGTFLLWWGWFGINAGSVWGITGGRWRLGARAAVATIMASIGGGA 284

  Fly   268 TSSIYSFWRHGGGMDIMDLINGVLGSLVSITAGCFLYRAWEALVIGAIGSLFCVLAMPLFDRMGV 332
            |:...||.: ...:.:..||||:|.|:|||||.|.:.|.|.|||||:|.|:|.:..:||.||:.:
 Worm   285 TAITISFVK-TKKLQVNFLINGILSSIVSITAICAVSRPWHALVIGSISSVFSIAVLPLLDRLHI 348

  Fly   333 DDPVGASAVHGVCGIWGVIAVGLFADNPIPL-DTTNGRSGLFKGGGWYLLGIQTLSALCLACWGV 396
            |||||...:|....|||:||||:|.:....| ..||.||||.....:.||.:|......:..:..
 Worm   349 DDPVGIVPIHLTSSIWGMIAVGIFCEEDKYLGSATNNRSGLLYSWSFELLWVQLQCTAAILIYSA 413

  Fly   397 CSTFLLLYVINKI-IPIRMDPHEELLGADLTEHRIRHSQIG---LSRAISALAPIKVDLKDIAGI 457
            .:.||.|::|:|. :.:|:..:||.:|||:.||.:..:.:.   |.:.:|.              
 Worm   414 TTGFLALFLISKSPLGLRVTDYEEQIGADVIEHGLAGTNVARYVLEKPLST-------------- 464

  Fly   458 QPIGINPGHERSIDQLRAAEDKLQQWQSYLEQVSGSRANVKMDAG---QSHADINFKPRTA---- 515
                      |:...:..|   :.:|:...::.|..:   :|:|.   :......|...||    
 Worm   465 ----------RTFQTVTKA---ITKWKMLAKKKSRQK---RMEAAKLKRQEEQETFTNGTAIANG 513

  Fly   516 -GNVFNRRIPARKSISGGLYRSNN 538
             |||.:.|..|.:|...|..:.:|
 Worm   514 NGNVLHHRTNATESNGTGAPKRSN 537

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AmtNP_001097800.1 Ammonium_transp 30..428 CDD:275788 182/407 (45%)
amt-3NP_495761.2 amt 39..450 CDD:273292 184/413 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160167905
Domainoid 1 1.000 351 1.000 Domainoid score I533
eggNOG 1 0.900 - - E1_COG0004
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H135910
Inparanoid 1 1.050 355 1.000 Inparanoid score I1309
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D910733at2759
OrthoFinder 1 1.000 - - FOG0001736
OrthoInspector 1 1.000 - - otm14727
orthoMCL 1 0.900 - - OOG6_100186
Panther 1 1.100 - - O PTHR11730
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R16229
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1413.790

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