DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hsc70-4 and hspa12a.1

DIOPT Version :9

Sequence 1:NP_001262586.1 Gene:Hsc70-4 / 41840 FlyBaseID:FBgn0266599 Length:651 Species:Drosophila melanogaster
Sequence 2:NP_001038342.1 Gene:hspa12a.1 / 558896 ZFINID:ZDB-GENE-061009-21 Length:571 Species:Danio rerio


Alignment Length:605 Identity:124/605 - (20%)
Similarity:232/605 - (38%) Gaps:171/605 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 VGIDLGTTYSCVGVF----QHGKVEIIAN---DQGNRT--TPSYVAFTDTE--RLIGDAAKNQVA 60
            :.||.||:||...:.    |..:...|.|   :.|..|  ||:.:.|.:.|  :..|        
Zfish     8 IAIDFGTSYSGYAISFKTKQPQESIQIPNWGVNFGYNTFKTPTCILFDEHETFQKFG-------- 64

  Fly    61 MNPTQTIFDAKRLIGRKFDDAAVQSD--MKHWPFEVVSADGKPKIEVTYKD----EKKTFFPEEI 119
                   :||.....|....:..:..  .:|:..|:...:....:.:|.|:    :..|.|.|.:
Zfish    65 -------YDAMMTYTRSTPKSQARKSFLFEHFKMELYDKEIHRDLMITAKNGGQMKALTVFSESL 122

  Fly   120 SSM---VLTKMKE--TAEAYLGKTVTNAVITVPAYFNDSQRQATKDAGTIAGLNV------LRII 173
            ..:   .|.|:||  |.:.::...|| .|:||||.:|.:.:|..::|...|||.:      |...
Zfish   123 RYLKDHALEKIKENTTGKTFIASDVT-WVLTVPAIWNAAAKQFMREAAIEAGLVIESEPERLVFA 186

  Fly   174 NEPTAAAI--------AYGLDKKAVGE-------RNVLIFDLGGGTFDVSILS-IDDGIFEVKST 222
            .||.||:|        .| :.::|..:       ...::.|.||||.|:::.. ::||..:..:.
Zfish   187 LEPEAASIYCKHLPSEGY-ISEEACRDTLEQKPGTQYMVVDCGGGTIDITVHEVVEDGKLKELNA 250

  Fly   223 AGDTHLGGEDFDNRLVTHFVQEFKRK--HKKDLTTNKRALR-----RLRTACE-----RAKRTLS 275
            |....:||:..|.:.::...:.|..|  :|.:......||:     .|..:|:     :...||.
Zfish   251 ASGNDMGGQTVDRKFISFLKEIFSEKIYNKFEQNFPAEALKLKYDIALAKSCDQLVLIQCPVTLQ 315

  Fly   276 SSTQASIEIDSLFEGT------DFYTSITRARFEELNADLFRSTMDPVEKALRDAKLDKSVIHDI 334
            ...:....|:|.|||.      :....|...:.:....:..::|.:.:||.:.:.:|:   |..:
Zfish   316 ELAKKEKAIESYFEGVEGAEWDEGSIIIKEDKLQSFFDESLKTTAEKLEKIMSNPELN---IEYM 377

  Fly   335 VLVGGSTRIPKVQRLLQDLFNGKELNKSINPD---------------------EAVAYGAAVQA- 377
            :||||......:::.|::.|:..::...:.|.                     .|:.||..:.| 
Zfish   378 LLVGGFAECKILKKFLKERFDKCKIVCPVEPQVVIIKGAIRYAKQPKVVKSRMSALTYGIRIDAP 442

  Fly   378 --AILHGDKSQEV--QDLLLLDVTPLSLGIETAGGVMSVLIKRNTTI-----------PTKQTQT 427
              .:||..|:..|  :.....||.     .||       .:::..::           |:...||
Zfish   443 FDEVLHKGKTSYVNSERQTYCDVC-----FET-------FVRKGESVNCDEVRHFFFNPSHTNQT 495

  Fly   428 FTT---YSDN--------QPGVLIQVYEGERAMTKDNNLLGKFELSGIPPAPRGVP---QIEVTF 478
            |.|   :|.|        :|||               .|:|.|:: |:|....|:.   ::|:.|
Zfish   496 FATFQFFSTNEKQVQFIDEPGV---------------ELVGVFQV-GMPKTDGGLSREIKLEIKF 544

  Fly   479 ----------DIDANGILNV 488
                      |:|:....:|
Zfish   545 GSTEMKATATDVDSGETTSV 564

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hsc70-4NP_001262586.1 PTZ00009 1..612 CDD:240227 124/605 (20%)
HSPA1-2_6-8-like_NBD 6..381 CDD:212675 95/459 (21%)
hspa12a.1NP_001038342.1 HSPA12_like_NBD 6..420 CDD:212671 91/431 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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