DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hsc70-4 and Hspa12b

DIOPT Version :9

Sequence 1:NP_001262586.1 Gene:Hsc70-4 / 41840 FlyBaseID:FBgn0266599 Length:651 Species:Drosophila melanogaster
Sequence 2:NP_001381945.1 Gene:Hspa12b / 311427 RGDID:1312004 Length:685 Species:Rattus norvegicus


Alignment Length:656 Identity:136/656 - (20%)
Similarity:227/656 - (34%) Gaps:217/656 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 IIANDQGNRTTPSYVAF---TDTERLI-------GDAAKNQVAMNPTQT--------IFDAKRLI 74
            ::|.|.|  ||.|..||   ||.|.:.       ||..   ||...|.|        ||.:....
  Rat    62 VVAIDFG--TTSSGYAFSFATDPEAIHMMRKWEGGDPG---VAHQKTPTCLLLTPEGIFHSFGYT 121

  Fly    75 GRKFDDAAVQSDMKHWPF------------------EVVSADGKPKIEVTYKDEKKTFFPEEISS 121
            .|.:.......:.:.|.:                  ::.:.:||..:.:........||.|.   
  Rat   122 ARDYYHDLDPEEARDWLYFEKFKMKIHSATDLTLKTQLEAVNGKKMLALEVFAHALRFFKEH--- 183

  Fly   122 MVLTKMKETAEAYLGKTVTNAVITVPAYFNDSQRQATKDAGTIAGL------NVLRIINEPTAAA 180
             .|.:::|.:|..|.|.....|:||||.:....:|..::|..:|||      ..|.|..||.||:
  Rat   184 -ALQELREQSECMLEKDAVRWVLTVPAIWKQPAKQFMREAAYLAGLVSREDAEKLLIALEPEAAS 247

  Fly   181 I-----------------AYG-----------------------------LDKKAVGE------- 192
            :                 |.|                             |.:..|||       
  Rat   248 VYCRKLRLHQLMDLSSRTAGGGRLGERRSIDSSFRHAREQLRRSRHSRTFLVESGVGELWSEMQE 312

  Fly   193 -RNVLIFDLGGGTFDVSILSIDD--GIFE--VKSTAGDTHLGGED--FDNRLVTHFVQEFKRKHK 250
             ...::.|.||||.|:::..::.  |..:  .|::.|.....|.|  |:..|...|.::|..|.|
  Rat   313 GDRYMVADCGGGTVDLTVHQLEQPHGTLKELYKASGGPYGAVGVDLAFEQLLCRIFGEDFIAKFK 377

  Fly   251 K-------DLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGTDFY---------TSITR 299
            :       |||          .|.|..|||.......::.|...|...|||         |::.|
  Rat   378 RQRPAAWVDLT----------IAFEARKRTAGPHRAGALNISLPFSFIDFYRKQRGHNVETALRR 432

  Fly   300 ARF---------------EELNADLFRST----MDPVEKALRDAKLDKSVIHDIVLVGGSTRIPK 345
            :..               |.:| :||:.|    :..:|..|  ||.:...:..:.||||......
  Rat   433 SSVNFVKWSSQGMLRMSCEAMN-ELFQPTVSGIIQHIEMLL--AKPEVQGVKLLFLVGGFAESAV 494

  Fly   346 VQRLLQDLFNGKELNKSINPDEAVAYGAAVQAAILHGDKSQEVQDLLLLDVTPLSLGIETAGGVM 410
            :|..:|:....:.|...:..|..:   ..::.|:|.|    :...::.:..:||:.|:    ||:
  Rat   495 LQHAVQEALGNRGLRVVVPHDVGL---TILKGAVLFG----QAPGVVRVRRSPLTYGV----GVL 548

  Fly   411 S-----------VLIKRNTTIPTKQTQTFT--------------TYSDNQPG---VLIQVY---- 443
            :           :|::......|...:.|.              :|...:||   |||.:|    
  Rat   549 NRFVPGHHPPEKLLVRDGRRWCTDVFERFVAAEQSVALGEEVRRSYCPARPGQRRVLINLYCCAA 613

  Fly   444 --------EGER---AMTKDNNLLGKFELSGIPPAPRGVPQIEVTFDIDANGILNVTALERSTNK 497
                    .|.|   |::.:....|..|.:|..|:.|.:.......|.:    :.|||::.|||:
  Rat   614 EDARFITDPGVRKCGALSLELEPEGSPENTGTSPSRREIRAAMQFGDTE----IKVTAVDVSTNR 674

  Fly   498 ENKITI 503
            ..:..|
  Rat   675 SVRAAI 680

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hsc70-4NP_001262586.1 PTZ00009 1..612 CDD:240227 136/656 (21%)
HSPA1-2_6-8-like_NBD 6..381 CDD:212675 103/489 (21%)
Hspa12bNP_001381945.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0443
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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