DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hsc70-4 and lsh1

DIOPT Version :9

Sequence 1:NP_001262586.1 Gene:Hsc70-4 / 41840 FlyBaseID:FBgn0266599 Length:651 Species:Drosophila melanogaster
Sequence 2:NP_592867.1 Gene:lsh1 / 2541537 PomBaseID:SPAC1F5.06 Length:848 Species:Schizosaccharomyces pombe


Alignment Length:682 Identity:177/682 - (25%)
Similarity:297/682 - (43%) Gaps:101/682 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 VGIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTQTIFDA 70
            :.||.||.::...:.:.| .:||:......|...|.|||...||:.|..|.|.....|..:|.:.
pombe    25 LAIDYGTEWTKAALIKPGIPLEIVLTKDTRRKEQSAVAFKGNERIFGVDASNLATRFPAHSIRNV 89

  Fly    71 KRLIGRKFDDAAVQSDM--KHWPFEVVSADGKPKIEVTYKDE-----------KKTFFPEEISSM 122
            |.|:    |.|.::|.:  |:       ....|.|::...:|           ::.:..|||.:|
pombe    90 KELL----DTAGLESVLVQKY-------QSSYPAIQLVENEETTSGISFVISDEENYSLEEIIAM 143

  Fly   123 VLTKMKETAEAYLGKTVTNAVITVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDK 187
            .:......||....:.:|:.|:|||.:||:.||....:|..|...:||.:|::..|.||.|.|.:
pombe   144 TMEHYISLAEEMAHEKITDLVLTVPPHFNELQRSILLEAARILNKHVLALIDDNVAVAIEYSLSR 208

  Fly   188 K-AVGERNVLIFDLGGGTFDVSILSID----------DGIFEVKSTA-GDT-HLGGEDFDNRLVT 239
            . :......:|:|.|.|:...:::|.|          ..|..:::.| |.| .|.|.:.:.:|:.
pombe   209 SFSTDPTYNIIYDSGSGSTSATVISFDTVEGSSLGKKQNITRIRALASGFTLKLSGNEINRKLIG 273

  Fly   240 HFVQEFKRKHKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGTDFYTSITRARFEE 304
            .....|.:||..||:.|.|||.||.....|.|..||::::|...|:.|.:|.||...|||:..|.
pombe   274 FMKNSFYQKHGIDLSHNHRALARLEKEALRVKHILSANSEAIASIEELADGIDFRLKITRSVLES 338

  Fly   305 LNADLFRSTMDPVEKALRDAKLDKSVIHDIVLVGGSTRIPKVQRLLQDLFNGKELNKSINPDEAV 369
            |..|:..:.::|:.|||:.|.|..|.|:.|:|.||::|||.:|..|.|..:..:::|::|.|||.
pombe   339 LCKDMEDAAVEPINKALKKANLTFSEINSIILFGGASRIPFIQSTLADYVSSDKISKNVNADEAS 403

  Fly   370 AYGAAVQAAILHGDKSQEVQDLLLLDVT--PLSLGIETAGGVMSVL------IKRNTTIPTKQTQ 426
            ..|||...|.|  .||..|:.|::.|:.  |..|.:.|:..::::.      ::.|.||....| 
pombe   404 VKGAAFYGASL--TKSFRVKPLIVQDIINYPYLLSLGTSEYIVALPDSTPYGMQHNVTIHNVST- 465

  Fly   427 TFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELSGIPPAPR----GVPQIEVTFDID-ANGIL 486
                 ....|..         .::.:..|:|:|.||.|....:    ....|:::|..| ..|||
pombe   466 -----IGKHPSF---------PLSNNGELIGEFTLSNITDVEKVCACSNKNIQISFSSDRTKGIL 516

  Fly   487 ----------------------NVTALERS-------TNKENKITITNDK-GRLSKEDIERMVNE 521
                                  .|.:|..|       .|:...|..|..| |.:|...:.....:
pombe   517 VPLSAIMTCEHGELSSKHKLGDRVKSLFGSHDESGLRNNESYPIGFTYKKYGEMSDNALRLASAK 581

  Fly   522 AEKYRNEDEKQKETIAAKNGLESYCFNMKATLDEDNLKTKISDSDRTTILDKCN-ETIKWL-DAN 584
            .|:....|:.:.....|.|.||:..:..:|.:|:|.. .:.::.:.|.||...: |:..|| :..
pombe   582 LERRLQIDKSKAAHDNALNELETLLYRAQAMVDDDEF-LEFANPEETKILKNDSVESYDWLIEYG 645

  Fly   585 QLADKEEYEHRQKELEGVCNPIITKLYQGAGF 616
            ..:...|...|.|:|:.....|..:..|...|
pombe   646 SQSPTSEVTDRYKKLDDTLKSISFRFDQAKQF 677

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hsc70-4NP_001262586.1 PTZ00009 1..612 CDD:240227 175/676 (26%)
HSPA1-2_6-8-like_NBD 6..381 CDD:212675 120/400 (30%)
lsh1NP_592867.1 DnaK 19..667 CDD:223520 174/670 (26%)
HYOU1-like_NBD 25..412 CDD:212672 119/397 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0443
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR19375
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.910

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