DRSC/TRiP Functional Genomics Resources

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Protein Alignment Caf1-55 and grwd1

DIOPT Version :9

Sequence 1:NP_524354.1 Gene:Caf1-55 / 41836 FlyBaseID:FBgn0263979 Length:430 Species:Drosophila melanogaster
Sequence 2:NP_001003509.1 Gene:grwd1 / 445115 ZFINID:ZDB-GENE-030131-9844 Length:433 Species:Danio rerio


Alignment Length:360 Identity:101/360 - (28%)
Similarity:166/360 - (46%) Gaps:59/360 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    68 HRLIL-------GTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEI-K 124
            :|||:       ||....:::         .|.|.:.|....|.::.:         |.::|: .
Zfish    92 NRLIVMRMHNLQGTEKKKDED---------KSSDEESDEDEDDEDEDK---------KPQLELAM 138

  Fly   125 INHEGEVNRARYMPQNACVIATK-TPSSDVLVFDY-----TKHPS-------KPEPSGECQPDLR 176
            :.|.|.:||.|...:....:|.. :....|.:||.     ..|.|       |.|.  |..|...
Zfish   139 MPHYGGINRVRVTQRGEQTLAAVWSEKGQVEIFDLRLQLEAVHNSTAMSAFIKQEK--EATPLFS 201

  Fly   177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRV--IDAKNIFTGHTAVVEDVAW 239
            ..||..||:.:.|:|.:.|.::|......|.:|:    |:|...  ||.:. |:.|:..|||:.|
Zfish   202 FAGHMSEGFTIDWSPKVPGRMVSGDCKKNIHVWE----PQEGGTWKIDQRP-FSSHSKSVEDLQW 261

  Fly   240 HLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 304
            .....::|.|.:.||.:.|||.|....|..|.. :||:::||.:|:|....||| :|..|..:.:
Zfish   262 SPTEATVFASCSVDQSIRIWDIRAPPNSMLSAN-EAHSSDVNVISWNRTEPFIL-SGGDDGLLKV 324

  Fly   305 WDLRNLK--LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS----KIGEEQSTEDA 363
            ||||..:  ..:.||:.|...:..|||||.:.::.|:||.|..:..||||    .:|.:  .||.
Zfish   325 WDLRQFQSGRPVASFKQHSAPVTSVQWSPVDSSVFAASGADDVISQWDLSVESCDMGGQ--AEDV 387

  Fly   364 EDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVS 398
            :..||:|||:|.|. .::.:..|:|..|.::.|.:
Zfish   388 KQLPPQLLFLHQGQ-KEVKELHWHPQIPGVLISTA 421

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Caf1-55NP_524354.1 CAF1C_H4-bd 23..92 CDD:403473 5/30 (17%)
WD40 127..408 CDD:421866 90/293 (31%)
WD40 repeat 132..179 CDD:293791 13/59 (22%)
WD40 repeat 184..228 CDD:293791 11/45 (24%)
WD40 repeat 235..274 CDD:293791 13/38 (34%)
WD40 repeat 280..318 CDD:293791 14/39 (36%)
WD40 repeat 324..375 CDD:293791 21/54 (39%)
WD40 repeat 381..406 CDD:293791 4/18 (22%)
grwd1NP_001003509.1 CAF1C_H4-bd 35..102 CDD:289068 3/9 (33%)
WD40 <140..>380 CDD:225201 76/248 (31%)
WD40 repeat 146..204 CDD:293791 13/59 (22%)
WD40 197..>378 CDD:295369 62/187 (33%)
WD40 repeat 209..250 CDD:293791 11/45 (24%)
WD40 repeat 257..294 CDD:293791 13/36 (36%)
WD40 repeat 301..340 CDD:293791 14/39 (36%)
WD40 repeat 346..391 CDD:293791 16/46 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D831322at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.920

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