DRSC/TRiP Functional Genomics Resources

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Protein Alignment Caf1-55 and grwd1

DIOPT Version :9

Sequence 1:NP_524354.1 Gene:Caf1-55 / 41836 FlyBaseID:FBgn0263979 Length:430 Species:Drosophila melanogaster
Sequence 2:NP_989268.3 Gene:grwd1 / 394881 XenbaseID:XB-GENE-986093 Length:466 Species:Xenopus tropicalis


Alignment Length:415 Identity:111/415 - (26%)
Similarity:185/415 - (44%) Gaps:57/415 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 EERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTKQDGKDYSVHR-LILGTHTSDEQ 80
            ||.|:::|..:       ||....|.|   |.|:...:.|...::..||.:.. |..||.....|
 Frog    64 EELVMDQEAYV-------LYHQAQTGA---PCLSFDVIRDTLGENRTDYPLTMYLCAGTQADSAQ 118

  Fly    81 -NHLLIA---SVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYMPQNA 141
             |.:|:.   ::...|::.:.|.....::.||.........::|:.: :.|.|.:||.|......
 Frog   119 GNRMLVMKMYNLHRTSKEKKDDSDSESSDSGEEEDEEEKKPQLELAM-VPHYGGINRIRVSTMGE 182

  Fly   142 C-VIATKTPSSDVLVFDYTKHPSK-----------PEPSGECQPDLRLRGHQKEGYGLSWNPNLN 194
            . |.|..:....|.::|..|..|.           .|...:.:|.....||..||:.:.|:|...
 Frog   183 VPVAAVWSEKGQVDIYDLRKQLSAVSDSQVLAAFLKEEQAKIKPVFSFSGHMTEGFAMDWSPKTA 247

  Fly   195 GYLLSASDDHTICLWDINATPKE----HRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK 255
            |.|::...:..|.|||    |:|    |  :|.:. |||||..|||:.|.....::|.|.:.|..
 Frog   248 GRLVTGDCNKNIHLWD----PREGGTWH--VDQRP-FTGHTKSVEDLQWSPTEATVFASCSVDAS 305

  Fly   256 LMIWDTRNNNTSKPSHTV-----DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK--LK 313
            :.|||.|    :.|:...     .||.::||.:|:|....||: :|..|..:.:||||..:  :.
 Frog   306 IRIWDVR----AAPNKACMLTASQAHESDVNVISWNHQEPFIV-SGGDDGVLKIWDLRQFQKGVS 365

  Fly   314 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDG-----PPELLFI 373
            :..|:.|...|..|:|.|.:..:.|:||.|.::..|||:...::....:.||.     ||:|||:
 Frog   366 VAKFKQHTAPITSVEWHPTDSGVFAASGADDQITQWDLAVERDQDQEAETEDPALAGIPPQLLFV 430

  Fly   374 HGGHTAKISDFSWNPNEPWIICSVS 398
            |.|. ..|.:..|:|..|.::.|.:
 Frog   431 HQGE-KDIKELHWHPQCPGVVVSTA 454

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Caf1-55NP_524354.1 CAF1C_H4-bd 23..92 CDD:403473 16/73 (22%)
WD40 127..408 CDD:421866 87/300 (29%)
WD40 repeat 132..179 CDD:293791 11/58 (19%)
WD40 repeat 184..228 CDD:293791 13/47 (28%)
WD40 repeat 235..274 CDD:293791 11/43 (26%)
WD40 repeat 280..318 CDD:293791 12/39 (31%)
WD40 repeat 324..375 CDD:293791 18/55 (33%)
WD40 repeat 381..406 CDD:293791 5/18 (28%)
grwd1NP_989268.3 CAF1C_H4-bd 63..131 CDD:372002 19/76 (25%)
WD40 226..>404 CDD:392136 60/189 (32%)
WD40 repeat 238..279 CDD:293791 13/47 (28%)
WD40 repeat 284..324 CDD:293791 12/43 (28%)
WD40 repeat 332..370 CDD:293791 11/38 (29%)
WD40 repeat 376..417 CDD:293791 11/40 (28%)
WD40 repeat 437..463 CDD:293791 5/18 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D831322at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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