DRSC/TRiP Functional Genomics Resources

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Protein Alignment Caf1-55 and Rbbp4

DIOPT Version :9

Sequence 1:NP_524354.1 Gene:Caf1-55 / 41836 FlyBaseID:FBgn0263979 Length:430 Species:Drosophila melanogaster
Sequence 2:NP_001101382.1 Gene:Rbbp4 / 313048 RGDID:1593768 Length:425 Species:Rattus norvegicus


Alignment Length:419 Identity:378/419 - (90%)
Similarity:403/419 - (96%) Gaps:4/419 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MVDRSDNAAESFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTKQDGKDY 65
            |.|:.    .:|||||||||||||||||||||||||||||||||||||||||||||||:.:|||:
  Rat     1 MADKE----AAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDF 61

  Fly    66 SVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKINHEGE 130
            |:|||:||||||||||||:|||||||::|||||.||||:|||||||||||.||||||||||||||
  Rat    62 SIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGE 126

  Fly   131 VNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG 195
            ||||||||||.|:||||||||||||||||||||||:|||||.|||||||||||||||||||||:|
  Rat   127 VNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSG 191

  Fly   196 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWD 260
            :|||||||||||||||:|.|||.:|:|||.||||||||||||:||||||||||||||||||||||
  Rat   192 HLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWD 256

  Fly   261 TRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIF 325
            ||:||||||||:|||||||||||||||||||||||||||||||||||||||||||||||||||||
  Rat   257 TRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIF 321

  Fly   326 QVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE 390
            |||||||||||||||||||||:||||||||||||.||||||||||||||||||||||||||||||
  Rat   322 QVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNE 386

  Fly   391 PWIICSVSEDNIMQVWQMAENVYNDEEPE 419
            ||:||||||||||||||||||:||||:||
  Rat   387 PWVICSVSEDNIMQVWQMAENIYNDEDPE 415

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Caf1-55NP_524354.1 CAF1C_H4-bd 23..92 CDD:403473 61/68 (90%)
WD40 127..408 CDD:421866 262/280 (94%)
WD40 repeat 132..179 CDD:293791 42/46 (91%)
WD40 repeat 184..228 CDD:293791 35/43 (81%)
WD40 repeat 235..274 CDD:293791 35/38 (92%)
WD40 repeat 280..318 CDD:293791 37/37 (100%)
WD40 repeat 324..375 CDD:293791 48/50 (96%)
WD40 repeat 381..406 CDD:293791 23/24 (96%)
Rbbp4NP_001101382.1 CAF1C_H4-bd 19..88 CDD:403473 61/68 (90%)
WD40 122..403 CDD:421866 262/280 (94%)
WD40 repeat 128..175 CDD:293791 42/46 (91%)
WD40 repeat 180..224 CDD:293791 35/43 (81%)
WD40 repeat 231..270 CDD:293791 35/38 (92%)
WD40 repeat 276..314 CDD:293791 37/37 (100%)
WD40 repeat 320..371 CDD:293791 48/50 (96%)
WD40 repeat 377..402 CDD:293791 23/24 (96%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 167 1.000 Domainoid score I3761
eggNOG 1 0.900 - - E1_KOG0264
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H21153
Inparanoid 1 1.050 808 1.000 Inparanoid score I461
OMA 1 1.010 - - QHG53987
OrthoDB 1 1.010 - - D250544at33208
OrthoFinder 1 1.000 - - FOG0001098
OrthoInspector 1 1.000 - - otm45660
orthoMCL 1 0.900 - - OOG6_101102
Panther 1 1.100 - - LDO PTHR22850
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X748
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.840

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