DRSC/TRiP Functional Genomics Resources

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Protein Alignment Caf1-55 and mis16

DIOPT Version :9

Sequence 1:NP_524354.1 Gene:Caf1-55 / 41836 FlyBaseID:FBgn0263979 Length:430 Species:Drosophila melanogaster
Sequence 2:NP_587881.1 Gene:mis16 / 2539214 PomBaseID:SPCC1672.10 Length:430 Species:Schizosaccharomyces pombe


Alignment Length:426 Identity:210/426 - (49%)
Similarity:279/426 - (65%) Gaps:35/426 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 ERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTS-DEQN 81
            ::.|.||||:||:|.|||||||:||||||||||.|||||.....|.|||:.||||||||| ::||
pombe    23 QKTIQEEYKLWKQNVPFLYDLVITHALEWPSLTIQWLPDKKTIPGTDYSIQRLILGTHTSGNDQN 87

  Fly    82 HLLIASVQLPSED-------------AQFDGSHYDNEKGEFGGFGSVCGKIEIEIKINHEGEVNR 133
            :|.|||||||:.|             ||..||:                .|||..||.|:|:|||
pombe    88 YLQIASVQLPNFDEDTTEFTPSTIRRAQATGSY----------------TIEISQKIPHDGDVNR 136

  Fly   134 ARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLL 198
            ||||||...:|||.....:..:||.|.|.:.  .:||..|...|:||..||:||.|||||.|.|.
pombe   137 ARYMPQKPEIIATMGEGGNAYIFDTTCHDAL--TTGEALPQAVLKGHTAEGFGLCWNPNLPGNLA 199

  Fly   199 SASDDHTICLWDINA---TPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWD 260
            :.::|..|||||:..   |..|.:||.....:..||.:|.||.:|..||:|..||:||..|.|.|
pombe   200 TGAEDQVICLWDVQTQSFTSSETKVISPIAKYHRHTDIVNDVQFHPQHEALLASVSDDCTLQIHD 264

  Fly   261 TRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIF 325
            ||.|...:....:.||:..:|.::.||:::::|||.|||||||||||||...:||:.|.|:||::
pombe   265 TRLNPEEEAPKVIQAHSKAINAVAINPFNDYLLATASADKTVALWDLRNPYQRLHTLEGHEDEVY 329

  Fly   326 QVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE 390
            .::||||:|.|||||.||||:.:|||.||||||:.||||||.|||||:|||||.:||:|||.|||
pombe   330 GLEWSPHDEPILASSSTDRRVCIWDLEKIGEEQTPEDAEDGSPELLFMHGGHTNRISEFSWCPNE 394

  Fly   391 PWIICSVSEDNIMQVWQMAENVYNDEEPEIPASELE 426
            .|::.|:::|||:|:|..:..::..:..::...:||
pombe   395 RWVVGSLADDNILQIWSPSRVIWGRDHVQVSPRDLE 430

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Caf1-55NP_524354.1 CAF1C_H4-bd 23..92 CDD:403473 51/69 (74%)
WD40 127..408 CDD:421866 145/283 (51%)
WD40 repeat 132..179 CDD:293791 19/46 (41%)
WD40 repeat 184..228 CDD:293791 20/46 (43%)
WD40 repeat 235..274 CDD:293791 16/38 (42%)
WD40 repeat 280..318 CDD:293791 21/37 (57%)
WD40 repeat 324..375 CDD:293791 34/50 (68%)
WD40 repeat 381..406 CDD:293791 14/24 (58%)
mis16NP_587881.1 CAF1C_H4-bd 28..98 CDD:315035 51/69 (74%)
WD40 130..418 CDD:238121 145/289 (50%)
WD40 repeat 135..180 CDD:293791 19/46 (41%)
WD40 repeat 185..224 CDD:293791 18/38 (47%)
WD40 repeat 239..278 CDD:293791 16/38 (42%)
WD40 repeat 284..322 CDD:293791 21/37 (57%)
WD40 repeat 328..379 CDD:293791 34/50 (68%)
WD40 repeat 385..410 CDD:293791 14/24 (58%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 111 1.000 Domainoid score I1596
eggNOG 1 0.900 - - E1_KOG0264
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H21153
Inparanoid 1 1.050 418 1.000 Inparanoid score I349
OMA 1 1.010 - - QHG53987
OrthoFinder 1 1.000 - - FOG0001098
OrthoInspector 1 1.000 - - oto101443
orthoMCL 1 0.900 - - OOG6_101102
Panther 1 1.100 - - LDO PTHR22850
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R552
SonicParanoid 1 1.000 - - X748
TreeFam 1 0.960 - -
1413.860

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