DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12241 and MSB4

DIOPT Version :10

Sequence 1:NP_650432.1 Gene:CG12241 / 41834 FlyBaseID:FBgn0038304 Length:804 Species:Drosophila melanogaster
Sequence 2:NP_014529.1 Gene:MSB4 / 854037 SGDID:S000005472 Length:492 Species:Saccharomyces cerevisiae


Alignment Length:585 Identity:138/585 - (23%)
Similarity:206/585 - (35%) Gaps:177/585 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 SIFGRDHEGYVGREEHTRKLQNLGSEDDLGELPPMMEELSVADGLRPNPGGPFSALTASMWPQEI 70
            |.|..|...|        .:.:|..:||.|:....:|...:...........|::|        |
Yeast    24 SSFNEDDANY--------SVLDLYDDDDEGDDSSTVERKEILTTRELEKAKAFTSL--------I 72

  Fly    71 LAKLGGGAELASGPNDQPEYRFDEFGFRVEEEDGPEQSSNKLLSIPFVEDAQQRLQWIAHLEFSH 135
            :|              .|| .||.:||           |.|..   |:...:....|   .|::.
Yeast    73 MA--------------DPE-NFDRYGF-----------SKKGY---FISQEEYDKWW---TEYNR 105

  Fly   136 NKEAAELSWE----------HVD---VMLPRTEKLRNMVRQGIPHTLRAQMWMRLSGALAKKQKS 187
            ..|..:..||          |.|   |...||::|...||:|||...|...|...:|. .::..:
Yeast   106 YTERRKKKWENFLLKNKIELHNDNPLVYPARTDELSKFVRKGIPAEWRGNAWWYFAGG-QRQLDA 169

  Fly   188 ETSYHDIVKASSNDQLMTSKQ---IEKDLLRILPTN-----ACFSNPNGTGIPRLRRILRGIAWL 244
            ....:|.:|:...:..::.|.   ||:||.|..|.|     ..|.|.....|..|||:|...:..
Yeast   170 NVGVYDRLKSDCREGAVSGKDMEAIERDLYRTFPDNIHFHKESFQNGEPAIIRSLRRVLMAFSVY 234

  Fly   245 FPDIGYCQGTGVIVACLLLFMEEENAFWMMATIVEDLLPASYYSSTLLGIQADQRVMHTLIANYL 309
            ...|||||....:|..||||||||.||||:..|....|| ..|.|.|.|...||.|:...|..||
Yeast   235 DKTIGYCQSMNFLVGLLLLFMEEEKAFWMLVIITGKYLP-GVYESDLEGANVDQGVLVLCIKEYL 298

  Fly   310 SSVDESLRKHDIE-----------------------LSLITLHWFLTLFANVVHMKILVRIWDWF 351
            ..:...:....:.                       |:|.|..||::.|..||.::..:||||..
Yeast   299 PEIWSHIESSYMNGNGSTDQISGPASGEEYLCRLPTLTLCTASWFMSCFVGVVPIETTLRIWDCL 363

  Fly   352 FYEGSIVLFQLTLGMLKVKEQDLKHLENSAQIFNSLSDIPGEVTDVEVLFRQALEVGGSLSQTVI 416
            |||.|..||::.||:||:.|.:.  ||:.:|                .||||             
Yeast   364 FYEESHFLFKVALGILKLSESEF--LESKSQ----------------KLFRQ------------- 397

  Fly   417 DTHRRRHLAYLMADQGHQIGNPEAAPNLPKQQLARRQVRKSKSILEAFLFRGDGNEGD----QLK 477
                                                        ..::.| |..|:.|    :||
Yeast   398 --------------------------------------------YSSYTF-GGSNDSDSTFKRLK 417

  Fly   478 NKNIRQTEILVDLREAILKVGRHFIT---IEPKLAGHIQLTANYSTESHAKDHENFINVARTRKR 539
            ||...|.|..:::.:.|....:..:.   |..|:....::..|..|:........::.:||.|:|
Yeast   418 NKIKTQEEADMEILQVIQNFPKRLLNPNDIFEKVLMKKKVALNGITQEKIDRGREYVAMARNRQR 482

  Fly   540  539
            Yeast   483  482

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12241NP_650432.1 TBC 161..375 CDD:214540 79/244 (32%)
SH3_SGSM3 540..592 CDD:212747 138/585 (24%)
RUN_SGSM3 570..783 CDD:439050
MSB4NP_014529.1 COG5210 <53..461 CDD:227535 123/525 (23%)
Blue background indicates that the domain is not in the aligned region.

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