DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12241 and MSB4

DIOPT Version :9

Sequence 1:NP_650432.1 Gene:CG12241 / 41834 FlyBaseID:FBgn0038304 Length:804 Species:Drosophila melanogaster
Sequence 2:NP_014529.1 Gene:MSB4 / 854037 SGDID:S000005472 Length:492 Species:Saccharomyces cerevisiae


Alignment Length:585 Identity:138/585 - (23%)
Similarity:206/585 - (35%) Gaps:177/585 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 SIFGRDHEGYVGREEHTRKLQNLGSEDDLGELPPMMEELSVADGLRPNPGGPFSALTASMWPQEI 70
            |.|..|...|        .:.:|..:||.|:....:|...:...........|::|        |
Yeast    24 SSFNEDDANY--------SVLDLYDDDDEGDDSSTVERKEILTTRELEKAKAFTSL--------I 72

  Fly    71 LAKLGGGAELASGPNDQPEYRFDEFGFRVEEEDGPEQSSNKLLSIPFVEDAQQRLQWIAHLEFSH 135
            :|              .|| .||.:||           |.|..   |:...:....|   .|::.
Yeast    73 MA--------------DPE-NFDRYGF-----------SKKGY---FISQEEYDKWW---TEYNR 105

  Fly   136 NKEAAELSWE----------HVD---VMLPRTEKLRNMVRQGIPHTLRAQMWMRLSGALAKKQKS 187
            ..|..:..||          |.|   |...||::|...||:|||...|...|...:|. .::..:
Yeast   106 YTERRKKKWENFLLKNKIELHNDNPLVYPARTDELSKFVRKGIPAEWRGNAWWYFAGG-QRQLDA 169

  Fly   188 ETSYHDIVKASSNDQLMTSKQ---IEKDLLRILPTN-----ACFSNPNGTGIPRLRRILRGIAWL 244
            ....:|.:|:...:..::.|.   ||:||.|..|.|     ..|.|.....|..|||:|...:..
Yeast   170 NVGVYDRLKSDCREGAVSGKDMEAIERDLYRTFPDNIHFHKESFQNGEPAIIRSLRRVLMAFSVY 234

  Fly   245 FPDIGYCQGTGVIVACLLLFMEEENAFWMMATIVEDLLPASYYSSTLLGIQADQRVMHTLIANYL 309
            ...|||||....:|..||||||||.||||:..|....|| ..|.|.|.|...||.|:...|..||
Yeast   235 DKTIGYCQSMNFLVGLLLLFMEEEKAFWMLVIITGKYLP-GVYESDLEGANVDQGVLVLCIKEYL 298

  Fly   310 SSVDESLRKHDIE-----------------------LSLITLHWFLTLFANVVHMKILVRIWDWF 351
            ..:...:....:.                       |:|.|..||::.|..||.::..:||||..
Yeast   299 PEIWSHIESSYMNGNGSTDQISGPASGEEYLCRLPTLTLCTASWFMSCFVGVVPIETTLRIWDCL 363

  Fly   352 FYEGSIVLFQLTLGMLKVKEQDLKHLENSAQIFNSLSDIPGEVTDVEVLFRQALEVGGSLSQTVI 416
            |||.|..||::.||:||:.|.:.  ||:.:|                .||||             
Yeast   364 FYEESHFLFKVALGILKLSESEF--LESKSQ----------------KLFRQ------------- 397

  Fly   417 DTHRRRHLAYLMADQGHQIGNPEAAPNLPKQQLARRQVRKSKSILEAFLFRGDGNEGD----QLK 477
                                                        ..::.| |..|:.|    :||
Yeast   398 --------------------------------------------YSSYTF-GGSNDSDSTFKRLK 417

  Fly   478 NKNIRQTEILVDLREAILKVGRHFIT---IEPKLAGHIQLTANYSTESHAKDHENFINVARTRKR 539
            ||...|.|..:::.:.|....:..:.   |..|:....::..|..|:........::.:||.|:|
Yeast   418 NKIKTQEEADMEILQVIQNFPKRLLNPNDIFEKVLMKKKVALNGITQEKIDRGREYVAMARNRQR 482

  Fly   540  539
            Yeast   483  482

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12241NP_650432.1 TBC 161..375 CDD:214540 79/244 (32%)
SH3_SGSM3 540..592 CDD:212747 138/585 (24%)
RUN 619..773 CDD:280855
MSB4NP_014529.1 COG5210 <53..461 CDD:227535 123/525 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5210
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S1881
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R540
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.790

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