DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12241 and RN-tre

DIOPT Version :9

Sequence 1:NP_650432.1 Gene:CG12241 / 41834 FlyBaseID:FBgn0038304 Length:804 Species:Drosophila melanogaster
Sequence 2:NP_652381.1 Gene:RN-tre / 36554 FlyBaseID:FBgn0020620 Length:571 Species:Drosophila melanogaster


Alignment Length:530 Identity:111/530 - (20%)
Similarity:197/530 - (37%) Gaps:144/530 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 PNDQPEYRFDEFGFRVEEEDGPEQSSNKLLSIPFVEDAQQRLQWIAH---LEFSHNKEAAEL--S 143
            |..:..:|.|::||..:..            :|...|||:     .|   :|...:|:..::  .
  Fly    41 PTFEIYHRTDKYGFLHDSR------------LPSTRDAQE-----VHRNKIEMERDKKWMKMLNQ 88

  Fly   144 WEHVDVMLPRTEKLRNMVRQGIPHTLRAQMWMRL----------SGA------LAKKQKSETSYH 192
            |.      |..:||...|.:|||..:|...|.:|          :|.      ||:|..:||   
  Fly    89 WP------PPQDKLHKRVYKGIPDRVRMVAWNKLLDIQQSINNNAGVYLRMLQLARKYSTET--- 144

  Fly   193 DIVKASSNDQLMTSKQIEKDLLRILPTNACFSNPNGTGIPRLRRILRGIAWLFPDIGYCQGTGVI 257
                          :||:.|:.|....|..|..........|..:|...:....::|||||...:
  Fly   145 --------------RQIDADVNRQFRDNLAFRERYSVKQCSLFNVLNAYSIYNSELGYCQGMACV 195

  Fly   258 VACLLLFMEEENAFWMMATIVEDLLPASYYSSTLLGIQADQRVMH------TLIANYLSSVDESL 316
            ...|||::.||.|||.:.|::.|    ..|....|.|:...::..      .:::..:..:.:..
  Fly   196 AGVLLLYLHEEEAFWALNTLITD----QKYGMHGLFIEGFPKLTRFIDHHDRIMSKIMRKLHKHF 256

  Fly   317 RKHDIELSLITLHWFLTLFANVVHMKILVRIWDWFFYEGSIVLFQLTLGMLKVKEQDLKHLENSA 381
            .||:::..|..:.||..:|...|...:.:|:||.|..:|..|:..:.:.:|.:.:.:|..|::..
  Fly   257 TKHNVDALLYAIKWFFVVFVERVPFSLSLRVWDIFMLDGDRVILSMAITILYLHKDELLRLKDMD 321

  Fly   382 QIFNSLSDIPGEV--------TDVEVLFRQALE-VGGSLSQTVIDTHRRRHLAYLMADQGHQIGN 437
            .|...|     :|        :|.:.:  |||| |...|....:|                 :..
  Fly   322 AIIEYL-----QVRLHKNFGYSDDDAI--QALERVMKKLKDLKLD-----------------VPP 362

  Fly   438 PEAAPNLPKQQLARRQVRKSKSILEAFLFRGDGNEGDQLKNKNIRQTEILVDLREAILKVGRHFI 502
            |..:...|.::|                  ||..|.|..|....|:.    |..:|..:|....|
  Fly   363 PAKSNEFPTRKL------------------GDFVEADMEKKIGRRRN----DYTDAEKQVITDVI 405

  Fly   503 TIEPKLAGHIQLTANYSTESHA-------KDHENFINVARTRKRRAKALHDFERHDDDELGFRRN 560
            :.:.:.|..:|.|.:|.|...|       |..|:..::|.:....:.:|:        ..||   
  Fly   406 SRQEQNAIDVQSTVSYETSECATGDGYSMKTFESITSLATSPANSSYSLY--------SNGF--- 459

  Fly   561 DIITIISQKD 570
            .:.||.|::|
  Fly   460 VVTTIDSEQD 469

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12241NP_650432.1 TBC 161..375 CDD:214540 53/235 (23%)
SH3_SGSM3 540..592 CDD:212747 7/31 (23%)
RUN 619..773 CDD:280855
RN-treNP_652381.1 TBC 100..315 CDD:214540 53/235 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45456609
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5210
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR22957
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.840

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