DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG12241 and Rabgap1

DIOPT Version :9

Sequence 1:NP_650432.1 Gene:CG12241 / 41834 FlyBaseID:FBgn0038304 Length:804 Species:Drosophila melanogaster
Sequence 2:NP_001349885.1 Gene:Rabgap1 / 227800 MGIID:2385139 Length:1064 Species:Mus musculus


Alignment Length:616 Identity:144/616 - (23%)
Similarity:219/616 - (35%) Gaps:177/616 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    62 TASMWPQEILAKLGGGAELASGPNDQPEYRFDEFGFRVEEEDGPEQSSNKLLSIPFVEDAQQRLQ 126
            |||  |...|.:.|..:.:...|   ||   |:     ||||..|    .|||            
Mouse   484 TAS--PSVRLPQSGSQSSMIPSP---PE---DD-----EEEDNDE----PLLS------------ 519

  Fly   127 WIAHLEFSH-NKEAAE---------LSWEHVDVMLPRTEKLRNMVRQGIPHTLRAQMWMRLSGAL 181
                 .|.. :||.||         ||..|:::.: |.::|.::||.|:|..||.::|..|:|..
Mouse   520 -----GFGDVSKECAEKILETWGELLSKWHLNLSV-RPKQLSSLVRSGVPEALRGEVWQLLAGCH 578

  Fly   182 AKKQKSETSYHDIVKASSNDQLMTSKQIEKDLLRILPTNACFSNPNGTGIPRLRRILRGIAWLFP 246
            ......|.....|.|.|..|..:|     :|:.|..|.:..|.:..|.|...|.:|.:..:....
Mouse   579 NNDHLVEKYRILITKESPQDSAIT-----RDINRTFPAHDYFKDTGGDGQDSLYKICKAYSVYDE 638

  Fly   247 DIGYCQGTGVIVACLLLFMEEENAFWMMATIVEDL------------LPASYYSSTLLGIQADQR 299
            :||||||...:.|.|||.|.||.||.::..|:.|.            |...:|..        :|
Mouse   639 EIGYCQGQSFLAAVLLLHMPEEQAFSVLVKIMFDYGLRELFKQNFEDLHCKFYQL--------ER 695

  Fly   300 VMHTLIAN-YLSSVDESLRKHDIELSLITLHWFLTLFANVVHMKILVRIWDWFFYEGSIVLFQLT 363
            :|...|.: |...:|.||..|     :....||||||.....:.::..|.|....||..|:|.:.
Mouse   696 LMQEYIPDLYNHFLDISLEAH-----MYASQWFLTLFTAKFPLYMVFHIIDLLLCEGISVIFNVA 755

  Fly   364 LGMLKVKEQD--LKHLENSAQIFNSLSDIPGEVTDVEVLFR-QALEVGGSLSQTVIDTHRRRHLA 425
            ||:||..:.|  |...|.:.:.|.  ..:|......|...| ..|.....:||..:....:.:  
Mouse   756 LGLLKTSKDDLLLTDFEGALKFFR--VQLPKRYRSEENAKRLMELACNTKISQKKLKKFEKEY-- 816

  Fly   426 YLMADQGHQIGNP--------------------------------------------EAAPNLPK 446
            :.|.:|..|..:|                                            |.|..|.|
Mouse   817 HTMREQQAQQEDPIERFERENRRLQEANMRLEQENDDLAHELVTSKIALRKDLDNAEEKADALNK 881

  Fly   447 QQL------------ARRQVRKSKSILEAFLFRGDGNEGDQLKNKNI-----------------R 482
            :.|            .||...:|..:.|......|..|.:..||.:|                 :
Mouse   882 ELLMTKQKLIDAEDEKRRLEEESAQLKEMCRRELDKAESEIKKNSSIIGDYKQICSQLSERLEKQ 946

  Fly   483 QTEILVDLREAILKVG-----RHFITIEPKLAGHIQLTANYSTESHAKDHENFIN--------VA 534
            ||...|::.:...||.     |.|...|.::.| |......|.|...::.|...|        :|
Mouse   947 QTANKVEIEKIRQKVDDCDRCRDFFNKEGRVKG-ISSAKGVSDEDTDEEKETLKNQLREMELELA 1010

  Fly   535 RTRKRRAKA---LHDFERHDDDELGFRRNDI 562
            :|:.:..:|   :.|.|.|    ||...:::
Mouse  1011 QTKLQLVEAECKIQDLEHH----LGLALSEV 1037

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12241NP_650432.1 TBC 161..375 CDD:214540 67/228 (29%)
SH3_SGSM3 540..592 CDD:212747 6/26 (23%)
RUN 619..773 CDD:280855
Rabgap1NP_001349885.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..101
PTB_Rab6GAP 140..268 CDD:269922
DUF3694 302..432 CDD:315198
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 478..520 18/69 (26%)
TBC 558..767 CDD:214540 67/226 (30%)
ERM 789..1013 CDD:330563 38/226 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5210
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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